; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003801 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003801
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold127:645631..646167
RNA-Seq ExpressionMS003801
SyntenyMS003801
Gene Ontology termsGO:0006139 - nucleobase-containing compound metabolic process (biological process)
GO:0019205 - nucleobase-containing compound kinase activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.7e-9699.4Show/hide
Query:  MFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRN
        MFLWRVFNDCVP MRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRN
Subjt:  MFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRN

Query:  AIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
        AIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
Subjt:  AIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.9e-2632.97Show/hide
Query:  SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQC---DFNNSVQDGLLYLVESLSTPDF
        S+WKL VP K+K+F+WR  ++ +P  +NL+ RGI   P C +CG + E+  HA F CKRA+++W  L P  F  C   + N S  +    L E L   D 
Subjt:  SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQC---DFNNSVQDGLLYLVESLSTPDF

Query:  DLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
        +L  +  W IWNDRN++   +Q+   + + +W+  ++       + +           SN R +  YW P  +  +K+N DA
Subjt:  DLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA

XP_030498020.1 uncharacterized protein LOC115713676 [Cannabis sativa]2.1e-2230.95Show/hide
Query:  SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLV
        ++W L VPPK+K F+W+ F+  +PC  NL  +   P+PNC +CG   E+  HAL  C RAK +W     + F      + ++D L+  + ++S  DF + 
Subjt:  SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLV

Query:  GVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPP
           VW IWN RN+I   +      +  ++++ Y++D+        GD  +  +A+   RT +++  PP
Subjt:  GVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPP

XP_030508852.1 uncharacterized protein LOC115723496 [Cannabis sativa]2.7e-2234.25Show/hide
Query:  WKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGV
        WKLK+PPKV++F+W+VF+  +P    L +R I  +P C +C    ET  HALF C RAK VW +       Q    +S  D LL L  SLS+ + +L  V
Subjt:  WKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGV

Query:  GVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDV----PSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
          W+IW++RNAI     +      + +  +Y+ +FQ        P            S++      W+ PP G +K+N DA
Subjt:  GVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDV----PSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA

XP_030509188.1 uncharacterized protein LOC115723863 [Cannabis sativa]4.9e-2434.05Show/hide
Query:  WKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQ----DGLLYLVESLSTPDFD
        WK+K+PPKV++F+W+VF+  +P    L +R I  +P+C +C    E+ +HALF C RAK VW +    +    DF+   Q    D LL+L  +LST +F+
Subjt:  WKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQ----DGLLYLVESLSTPDFD

Query:  LVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQ----VRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
        L  V  W  W++RNAI     +  ++  + +  +Y+ +FQ     R  P+       +   S++ T    W+ PP G +K+N DA
Subjt:  LVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQ----VRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA

TrEMBL top hitse value%identityAlignment
A0A6J1CTE3 uncharacterized protein LOC1110145788.0e-9799.4Show/hide
Query:  MFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRN
        MFLWRVFNDCVP MRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRN
Subjt:  MFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRN

Query:  AIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
        AIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
Subjt:  AIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA

A0A6J1DX30 uncharacterized protein LOC1110248744.3e-2632.97Show/hide
Query:  SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQC---DFNNSVQDGLLYLVESLSTPDF
        S+WKL VP K+K+F+WR  ++ +P  +NL+ RGI   P C +CG + E+  HA F CKRA+++W  L P  F  C   + N S  +    L E L   D 
Subjt:  SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQC---DFNNSVQDGLLYLVESLSTPDF

Query:  DLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
        +L  +  W IWNDRN++   +Q+   + + +W+  ++       + +           SN R +  YW P  +  +K+N DA
Subjt:  DLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA

A0A803PH33 Uncharacterized protein1.9e-2134.07Show/hide
Query:  WKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGV
        WKL++P K+++F+W+VF++ +P    L +R I  +P C +C  Q ET  HALF C RAKEVW I       +   ++S ++ LLY+ E  ST +F+    
Subjt:  WKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGV

Query:  GVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQ-VRDVPSLGDFRIQEDASSNDRTIE----NYWSPPPAGWIKINVDA
          W+IW +RNA    +         D+ L Y+  +Q V D P++    +   A     T      + W  PP G  K+N DA
Subjt:  GVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQ-VRDVPSLGDFRIQEDASSNDRTIE----NYWSPPPAGWIKINVDA

A0A803PM52 Uncharacterized protein5.0e-2232.12Show/hide
Query:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVW---NILLPQAFPQCDFNNSVQ----DGLLYLVESLST
        +W LK+P K+K+F+WR FN+ +P    L+K+ +  +  C +C +  E+  HALF+CK A+ VW   N LL       D+NNS      D L++L    + 
Subjt:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVW---NILLPQAFPQCDFNNSVQ----DGLLYLVESLST

Query:  PDFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDAS--------SNDRTIENYWSPPPAGWIKINVDA
         + + +   +W+IW +RN +    +   AK+ S + L Y ++F +     L D   Q   S         +  TI   W PP  G +K+NVDA
Subjt:  PDFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDAS--------SNDRTIENYWSPPPAGWIKINVDA

A0A803Q2K8 Uncharacterized protein2.4e-2434.05Show/hide
Query:  WKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQ----DGLLYLVESLSTPDFD
        WK+K+PPKV++F+W+VF+  +P    L +R I  +P+C +C    E+ +HALF C RAK VW +    +    DF+   Q    D LL+L  +LST +F+
Subjt:  WKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQ----DGLLYLVESLSTPDFD

Query:  LVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQ----VRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
        L  V  W  W++RNAI     +  ++  + +  +Y+ +FQ     R  P+       +   S++ T    W+ PP G +K+N DA
Subjt:  LVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQ----VRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.2e-0925Show/hide
Query:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLS----TPDF
        +WK++VP +VK FLW V N  V       +R +  +  C VC   +E+  H L  C     +W  ++PQ   Q  F+ S+ + L   +   S     P  
Subjt:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLS----TPDF

Query:  DLVGVGVWAIWNDR--NAIRMQRQIPD-AKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVD
         +  V +W  W  R  N      +  D  K   +W +   R      +  +   R++             W  P  GW+K+N D
Subjt:  DLVGVGVWAIWNDR--NAIRMQRQIPD-AKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVD

Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein3.0e-1928.88Show/hide
Query:  SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVW---NILLPQAF-PQCDFNNSVQDGLLYLVESLSTPD
        ++WKL V PK+K FLWR     +     L  R ID +P C  C  + ET  H +F C   + VW   NI++   + P   F +++ + L+ L ++ +T  
Subjt:  SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVW---NILLPQAF-PQCDFNNSVQDGLLYLVESLSTPD

Query:  FD--LVGVGVWAIWNDRNAIRMQR--QIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA
         D  L    +W +W  RN    Q+  Q PD + R   I          +     +  +  +     R   + W+PPP GW+K N D+
Subjt:  FD--LVGVGVWAIWNDRNAIRMQR--QIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA

AT3G09510.1 Ribonuclease H-like superfamily protein4.4e-1527.66Show/hide
Query:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNI----LLPQAFPQCDFNNSVQDGLLYLVESLSTPDF
        +W L + PK+K FLWR  +  +     L  RG+  +P+C  C ++ E+ +HALF C  A   W +    L+       DF  ++ + L ++ ++  +   
Subjt:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNI----LLPQAFPQCDFNNSVQDGLLYLVESLSTPDF

Query:  DLVGVG-VWAIWNDRNAIRMQ--RQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTI-EN--YWSPPPAGWIKINVDA
         L+ V  +W IW  RN +     R+ P   + S    T+           L   +  +   S  R I EN   W  PPA ++K N DA
Subjt:  DLVGVG-VWAIWNDRNAIRMQ--RQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTI-EN--YWSPPPAGWIKINVDA

AT3G25270.1 Ribonuclease H-like superfamily protein4.9e-1425.68Show/hide
Query:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNIL-LPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLV
        +WKLK  PK+K FLW++ +  +    NL +R I  +P C  C ++ ET+ H  F C  A++VW    +P    +           L L   L+     L 
Subjt:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNIL-LPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLV

Query:  GVGV---WAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRD--VPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVD
         + +   W +W  RN +  Q++    +         V++++  +  V SL   ++              W  PP+ WIK N D
Subjt:  GVGV---WAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRD--VPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVD

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.9e-0836.67Show/hide
Query:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAK
        +W LK+ PK+K+ +W+  N+ +P    L+ R I   P C  C +  ET  H LF C  A+
Subjt:  VWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCGTTTGGAAGCTTAAAGTTCCACCAAAAGTTAAGATGTTTTTGTGGAGAGTATTCAACGACTGTGTGCCTTGTATGAGAAATCTTATTAAGAGAGGGATTGATCCAAA
CCCAAATTGTCTAGTATGTGGGAAGCAAATTGAAACAACTGACCATGCTCTTTTTAAATGCAAAAGAGCAAAGGAGGTTTGGAATATTTTGTTACCTCAAGCTTTCCCGC
AATGTGATTTTAATAATTCCGTTCAAGATGGATTGTTGTATCTGGTGGAGTCGCTCTCTACTCCAGACTTTGATTTGGTTGGAGTTGGTGTTTGGGCAATCTGGAATGAT
CGAAATGCAATTAGAATGCAAAGACAAATTCCAGACGCTAAGATTAGGAGCGATTGGATCCTTACCTATGTGAGAGATTTTCAGGTCCGTGATGTCCCTTCTCTCGGTGA
TTTTCGGATTCAGGAGGATGCAAGTTCGAATGATCGGACTATTGAGAATTACTGGTCGCCTCCTCCGGCTGGTTGGATTAAAATAAACGTGGACGCA
mRNA sequenceShow/hide mRNA sequence
TCCGTTTGGAAGCTTAAAGTTCCACCAAAAGTTAAGATGTTTTTGTGGAGAGTATTCAACGACTGTGTGCCTTGTATGAGAAATCTTATTAAGAGAGGGATTGATCCAAA
CCCAAATTGTCTAGTATGTGGGAAGCAAATTGAAACAACTGACCATGCTCTTTTTAAATGCAAAAGAGCAAAGGAGGTTTGGAATATTTTGTTACCTCAAGCTTTCCCGC
AATGTGATTTTAATAATTCCGTTCAAGATGGATTGTTGTATCTGGTGGAGTCGCTCTCTACTCCAGACTTTGATTTGGTTGGAGTTGGTGTTTGGGCAATCTGGAATGAT
CGAAATGCAATTAGAATGCAAAGACAAATTCCAGACGCTAAGATTAGGAGCGATTGGATCCTTACCTATGTGAGAGATTTTCAGGTCCGTGATGTCCCTTCTCTCGGTGA
TTTTCGGATTCAGGAGGATGCAAGTTCGAATGATCGGACTATTGAGAATTACTGGTCGCCTCCTCCGGCTGGTTGGATTAAAATAAACGTGGACGCA
Protein sequenceShow/hide protein sequence
SVWKLKVPPKVKMFLWRVFNDCVPCMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWND
RNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAGWIKINVDA