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MS003829 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003829
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDynein light chain
Genome locationscaffold127:811915..812190
RNA-Seq ExpressionMS003829
SyntenyMS003829
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462685.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]5.4e-3584.62Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPP
        MLEGK  VKETDMSEKMQ+HAMASASHALDLFDVSD LSLA++IKK+FD TYG GWQCVVGSNFG FFTHS  TFIYF+LETLNFLIFK P
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPP

XP_017441827.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Vigna angularis]5.4e-3584.27Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK  VKETDMS KMQIHAMA+ASHALDL+DVSDC+S+AAHIKKEFD  YG GWQCVVGSNFG +FTHS+ TFIYFALETLNFLIFK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

XP_022144999.1 dynein light chain 1, cytoplasmic-like [Momordica charantia]9.8e-45100Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPPP
        MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPPP
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPPP

XP_022933771.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]1.3e-3688.76Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK  VK+TDMSEKMQIHA ASASHALDLFDVSDCLSLAAHIKKEFDR+YG GWQCVVGSNFG FFTHS  TFIYF+LETLNFLIFK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

XP_038878771.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]1.4e-3585.71Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPP
        MLEGK  VKETDMSEKMQ HAMASASHALDLFDVSD LSLAAHIKK+FDR YG GWQCVVGSNFG FFTHS  +FIYF+LETLNFLIFK P
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPP

TrEMBL top hitse value%identityAlignment
A0A0L9VRV1 Dynein light chain2.6e-3584.27Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK  VKETDMS KMQIHAMA+ASHALDL+DVSDC+S+AAHIKKEFD  YG GWQCVVGSNFG +FTHS+ TFIYFALETLNFLIFK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

A0A1S3UQ79 Dynein light chain2.6e-3584.27Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK  VKETDMS KMQIHAMA+ASHALDL+DVSDC+S+AAHIKKEFD  YG GWQCVVGSNFG +FTHS+ TFIYFALETLNFLIFK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

A0A6J1CTX2 Dynein light chain4.8e-45100Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPPP
        MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPPP
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPPP

A0A6J1EZZ1 Dynein light chain6.2e-3788.76Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK  VK+TDMSEKMQIHA ASASHALDLFDVSDCLSLAAHIKKEFDR+YG GWQCVVGSNFG FFTHS  TFIYF+LETLNFLIFK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

A0A6J1I806 Dynein light chain6.2e-3788.76Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK  VK+TDMSEKMQIHA ASASHALDLFDVSDCLSLAAHIKKEFDR+YG GWQCVVGSNFG FFTHS  TFIYF+LETLNFLIFK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

SwissProt top hitse value%identityAlignment
P61273 Dynein light chain 1, cytoplasmic2.2e-1546.07Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        M + K  +K  DMSE+MQ  ++  A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFGS+ TH T  FIYF L  +  L+FK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

P61285 Dynein light chain 1, cytoplasmic2.2e-1546.07Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        M + K  +K  DMSE+MQ  ++  A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFGS+ TH T  FIYF L  +  L+FK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

P63167 Dynein light chain 1, cytoplasmic2.2e-1546.07Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        M + K  +K  DMSE+MQ  ++  A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFGS+ TH T  FIYF L  +  L+FK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

P63168 Dynein light chain 1, cytoplasmic2.2e-1546.07Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        M + K  +K  DMSE+MQ  ++  A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFGS+ TH T  FIYF L  +  L+FK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

P63169 Dynein light chain 1, cytoplasmic2.2e-1546.07Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        M + K  +K  DMSE+MQ  ++  A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFGS+ TH T  FIYF L  +  L+FK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 116.4e-1869.49Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCV
        MLEGK  V+++DM  KMQ+ AMA AS ALDLFDV DC S+A HIKKEFD  YG GWQCV
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 112.7e-3274.16Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK  V+++DM  KMQ+ AMA AS ALDLFDV DC S+A HIKKEFD  YG GWQCVVGSNFG FFTHS  TFIYF LETL FLIFK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

AT3G16120.1 Dynein light chain type 1 family protein1.0e-3173.03Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK +V+ETDM  KMQ+ AM  AS +LDLFDV D +S+AAHIKKEFD  YG GWQCVVG+NFG FFTHS  TFIYF L TLNFLIFK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

AT4G27360.1 Dynein light chain type 1 family protein7.3e-2252.81Show/hide
Query:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        MLEGK  + +TDM + M+  A++ AS ALD FDV++   +A  IKKEFDR+YG GWQC+VG++FGSF TH +  FI+F++ +L  L+FK
Subjt:  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK

AT5G20110.1 Dynein light chain type 1 family protein1.0e-1546.99Show/hide
Query:  RVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK
        R+   DM   MQ HA   A   LD  +      +A ++KKEFD+ YG  W C+VGS+FGSF THST  FIYF+++ L  L+FK
Subjt:  RVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGGAAGGGCAGGGTGAAAGAAACCGACATGTCGGAGAAGATGCAGATTCACGCCATGGCCTCTGCATCTCACGCCCTCGATCTCTTCGACGTCTCCGATTG
CCTCTCCCTCGCCGCCCATATCAAAAAGGAATTCGATCGCACTTATGGAGGTGGATGGCAATGCGTGGTGGGTTCCAATTTCGGCTCTTTCTTCACCCATTCCACCGCCA
CTTTCATCTATTTTGCCCTCGAAACTCTCAATTTTCTCATCTTTAAACCTCCTCCT
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAGGGAAGGGCAGGGTGAAAGAAACCGACATGTCGGAGAAGATGCAGATTCACGCCATGGCCTCTGCATCTCACGCCCTCGATCTCTTCGACGTCTCCGATTG
CCTCTCCCTCGCCGCCCATATCAAAAAGGAATTCGATCGCACTTATGGAGGTGGATGGCAATGCGTGGTGGGTTCCAATTTCGGCTCTTTCTTCACCCATTCCACCGCCA
CTTTCATCTATTTTGCCCTCGAAACTCTCAATTTTCTCATCTTTAAACCTCCTCCT
Protein sequenceShow/hide protein sequence
MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVVGSNFGSFFTHSTATFIYFALETLNFLIFKPPP