; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003843 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003843
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein SPEAR1-like
Genome locationscaffold127:911716..912879
RNA-Seq ExpressionMS003843
SyntenyMS003843
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR040356 - SPEAR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587980.1 Protein SPEAR1, partial [Cucurbita argyrosperma subsp. sororia]6.2e-5372Show/hide
Query:  GSGYFGEQSLG-----------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTG
        GSGYFGE   G           S SPS S  R G+K       GSDKQPRQPQRGLGVAQLEKIRLHGEI       A++HPTSY+FNNDQE V+RVQTG
Subjt:  GSGYFGEQSLG-----------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTG

Query:  YSSMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
        YSS+P SS+SSSPSY FPSN+MMGFGEYERRNL DGDSQYSTAARWDPSNGGILE+ QHFAQP+MP YLQNPQAE
Subjt:  YSSMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE

XP_022145014.1 protein SPEAR3-like [Momordica charantia]2.8e-8299.39Show/hide
Query:  AGSGYFGEQSLGSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSSSS
        AGSGYFGEQSLGSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSM SSSSS
Subjt:  AGSGYFGEQSLGSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSSSS

Query:  SSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
        SSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
Subjt:  SSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE

XP_022933519.1 protein SPEAR1-like [Cucurbita moschata]4.3e-5472.57Show/hide
Query:  GSGYFGEQSLG-----------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTG
        GSGYFGE   G           S SPS S  R G+K       GSDKQPRQPQRGLGVAQLEKIRLHGEI       A++HPTSY+FNNDQE V+RVQTG
Subjt:  GSGYFGEQSLG-----------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTG

Query:  YSSMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
        YSS+P SS+SSSPSY FPSN+MMGFGEYERRNL DGDSQYSTAARWDPSNGGILE+ QHFAQP+MPCYLQNPQAE
Subjt:  YSSMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE

XP_023007409.1 protein SPEAR1-like [Cucurbita maxima]7.3e-5473.26Show/hide
Query:  GSGYFGEQSLG--------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSS
        GSGYFGE   G        S S S SP R G+K       GSDKQPRQPQRGLGVAQLEKIRLHGEI       A++HPTSY+FNNDQE V+RVQTGYSS
Subjt:  GSGYFGEQSLG--------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSS

Query:  MPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
        +P SS+SSSPSY FPSN+MMGFGEYERRNL DGDSQYSTAARWDPSNGGILE+ QHFAQP+MPCYLQNPQ E
Subjt:  MPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE

XP_023531219.1 protein SPEAR1-like [Cucurbita pepo subsp. pepo]2.8e-5372.94Show/hide
Query:  GSGYFGEQSLGSP------SPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMP
        GSGYFGE   G+       S S S   S   +  G   GSDKQPRQPQRGLGVAQLEKIRLHGEI       A++HPTSY+FNNDQE V+RVQTGYSS+P
Subjt:  GSGYFGEQSLGSP------SPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMP

Query:  SSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
         SS+SSSPSY FPSN+MMGFGEYERRNL DGDSQYSTAARWDPSNGGILE+ QHFAQP+MPCYLQNPQAE
Subjt:  SSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE

TrEMBL top hitse value%identityAlignment
A0A1S3CHQ6 protein SPEAR1-like6.2e-5171.75Show/hide
Query:  GSGYFGEQSLG---------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYS
        GSGYFGE SLG         S S SPS  R GKK       GSDKQPRQPQRGLGVAQLEKIRLHGEIAS     A +HPTSY+F NDQE +ARVQTGY+
Subjt:  GSGYFGEQSLG---------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYS

Query:  SMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPS-NGGILESTQHFAQPSMPCYLQNPQAEVLT
        S+P SS+SSSPSY FPSN+MMGFGEYERR+L DGDSQYST  RWDPS NGGILES QHFAQP+M CYLQNPQA+  T
Subjt:  SMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPS-NGGILESTQHFAQPSMPCYLQNPQAEVLT

A0A5A7VAB9 Protein SPEAR1-like6.2e-5171.75Show/hide
Query:  GSGYFGEQSLG---------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYS
        GSGYFGE SLG         S S SPS  R GKK       GSDKQPRQPQRGLGVAQLEKIRLHGEIAS     A +HPTSY+F NDQE +ARVQTGY+
Subjt:  GSGYFGEQSLG---------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYS

Query:  SMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPS-NGGILESTQHFAQPSMPCYLQNPQAEVLT
        S+P SS+SSSPSY FPSN+MMGFGEYERR+L DGDSQYST  RWDPS NGGILES QHFAQP+M CYLQNPQA+  T
Subjt:  SMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPS-NGGILESTQHFAQPSMPCYLQNPQAEVLT

A0A6J1CTY8 protein SPEAR3-like1.4e-8299.39Show/hide
Query:  AGSGYFGEQSLGSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSSSS
        AGSGYFGEQSLGSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSM SSSSS
Subjt:  AGSGYFGEQSLGSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSSSS

Query:  SSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
        SSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
Subjt:  SSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE

A0A6J1EZZ7 protein SPEAR1-like2.1e-5472.57Show/hide
Query:  GSGYFGEQSLG-----------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTG
        GSGYFGE   G           S SPS S  R G+K       GSDKQPRQPQRGLGVAQLEKIRLHGEI       A++HPTSY+FNNDQE V+RVQTG
Subjt:  GSGYFGEQSLG-----------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTG

Query:  YSSMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
        YSS+P SS+SSSPSY FPSN+MMGFGEYERRNL DGDSQYSTAARWDPSNGGILE+ QHFAQP+MPCYLQNPQAE
Subjt:  YSSMPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE

A0A6J1L4V3 protein SPEAR1-like3.5e-5473.26Show/hide
Query:  GSGYFGEQSLG--------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSS
        GSGYFGE   G        S S S SP R G+K       GSDKQPRQPQRGLGVAQLEKIRLHGEI       A++HPTSY+FNNDQE V+RVQTGYSS
Subjt:  GSGYFGEQSLG--------SPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSS

Query:  MPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE
        +P SS+SSSPSY FPSN+MMGFGEYERRNL DGDSQYSTAARWDPSNGGILE+ QHFAQP+MPCYLQNPQ E
Subjt:  MPSSSSSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAE

SwissProt top hitse value%identityAlignment
Q6IDB0 Protein SPEAR32.1e-1949.09Show/hide
Query:  GSGYFGEQSL-GSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAAT-ASYHPTSYSFNNDQEAVARVQTGYSSMPSSS-
        GS +FG   + GS S SP+   S       + +GSDK P+QPQRGLGVAQLEKIRLHGE    +  T  SYHP++Y     QE V R+Q GY S+PSSS 
Subjt:  GSGYFGEQSL-GSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAAT-ASYHPTSYSFNNDQEAVARVQTGYSSMPSSS-

Query:  ----SSSSP---SYAFPSNIMMGFG--EYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPS
            +SSSP    Y F  N+MM     +YER  +  GDSQ   A  W+PS  GILES QHF +P+
Subjt:  ----SSSSP---SYAFPSNIMMGFG--EYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPS

Q84X40 Protein SPEAR17.7e-1443.56Show/hide
Query:  GSGYFGEQS-LGSPSPSPSPRRSGKKSGS--GSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSS
        GS +FG  + +GS  PS SP  S     +  G  +GS+K P+QPQRGLGVAQLEKIRLHGE+  +  +  SY+P+ Y     QE V R+Q GYSS+PS S
Subjt:  GSGYFGEQS-LGSPSPSPSPRRSGKKSGS--GSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSS

Query:  SSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQN
        S+    Y F  N+MMG         +  D        W+PS  GILES QH  +P++  +  N
Subjt:  SSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQN

Arabidopsis top hitse value%identityAlignment
AT2G20080.1 unknown protein5.4e-1543.56Show/hide
Query:  GSGYFGEQS-LGSPSPSPSPRRSGKKSGS--GSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSS
        GS +FG  + +GS  PS SP  S     +  G  +GS+K P+QPQRGLGVAQLEKIRLHGE+  +  +  SY+P+ Y     QE V R+Q GYSS+PS S
Subjt:  GSGYFGEQS-LGSPSPSPSPRRSGKKSGS--GSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSS

Query:  SSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQN
        S+    Y F  N+MMG         +  D        W+PS  GILES QH  +P++  +  N
Subjt:  SSSSPSYAFPSNIMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQN

AT2G20080.2 unknown protein7.1e-0744.86Show/hide
Query:  GSGYFGEQS-LGSPSPSPSPRRSGKKSGS--GSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSS
        GS +FG  + +GS  PS SP  S     +  G  +GS+K P+QPQRGLGVAQLEKIRLHGE+  +  +  SY+P+ Y     Q  V R Q   ++M    
Subjt:  GSGYFGEQS-LGSPSPSPSPRRSGKKSGS--GSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSS

Query:  SSSSPSY
         S +PSY
Subjt:  SSSSPSY

AT4G28840.1 unknown protein1.5e-2049.09Show/hide
Query:  GSGYFGEQSL-GSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAAT-ASYHPTSYSFNNDQEAVARVQTGYSSMPSSS-
        GS +FG   + GS S SP+   S       + +GSDK P+QPQRGLGVAQLEKIRLHGE    +  T  SYHP++Y     QE V R+Q GY S+PSSS 
Subjt:  GSGYFGEQSL-GSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAAT-ASYHPTSYSFNNDQEAVARVQTGYSSMPSSS-

Query:  ----SSSSP---SYAFPSNIMMGFG--EYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPS
            +SSSP    Y F  N+MM     +YER  +  GDSQ   A  W+PS  GILES QHF +P+
Subjt:  ----SSSSP---SYAFPSNIMMGFG--EYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCGGGAGTGGTTATTTTGGGGAGCAGAGTTTGGGATCGCCGTCACCGTCGCCGTCGCCGAGGCGATCGGGGAAGAAGAGTGGTTCGGGTTCGAGTTCGGGTTCCGATAA
GCAGCCAAGGCAGCCGCAGAGAGGATTGGGAGTGGCTCAGCTTGAGAAGATCAGATTGCATGGTGAAATTGCTTCAGCTGCTGCTGCTACGGCTAGTTATCATCCCACTT
CTTACTCCTTCAACAACGATCAAGAGGCTGTGGCGAGAGTGCAGACGGGATATTCGTCTATGCCCTCGTCCTCGTCTTCCTCCTCGCCCTCCTATGCCTTCCCCTCCAAT
ATTATGATGGGGTTTGGAGAATATGAAAGAAGAAACCTCATAGATGGCGATTCTCAATACAGCACAGCAGCAAGATGGGATCCAAGCAACGGTGGCATCTTAGAGAGTAC
ACAACATTTTGCACAGCCAAGTATGCCATGTTATCTTCAAAATCCACAAGCTGAGGTACTTACT
mRNA sequenceShow/hide mRNA sequence
GCCGGGAGTGGTTATTTTGGGGAGCAGAGTTTGGGATCGCCGTCACCGTCGCCGTCGCCGAGGCGATCGGGGAAGAAGAGTGGTTCGGGTTCGAGTTCGGGTTCCGATAA
GCAGCCAAGGCAGCCGCAGAGAGGATTGGGAGTGGCTCAGCTTGAGAAGATCAGATTGCATGGTGAAATTGCTTCAGCTGCTGCTGCTACGGCTAGTTATCATCCCACTT
CTTACTCCTTCAACAACGATCAAGAGGCTGTGGCGAGAGTGCAGACGGGATATTCGTCTATGCCCTCGTCCTCGTCTTCCTCCTCGCCCTCCTATGCCTTCCCCTCCAAT
ATTATGATGGGGTTTGGAGAATATGAAAGAAGAAACCTCATAGATGGCGATTCTCAATACAGCACAGCAGCAAGATGGGATCCAAGCAACGGTGGCATCTTAGAGAGTAC
ACAACATTTTGCACAGCCAAGTATGCCATGTTATCTTCAAAATCCACAAGCTGAGGTACTTACT
Protein sequenceShow/hide protein sequence
AGSGYFGEQSLGSPSPSPSPRRSGKKSGSGSSSGSDKQPRQPQRGLGVAQLEKIRLHGEIASAAAATASYHPTSYSFNNDQEAVARVQTGYSSMPSSSSSSSPSYAFPSN
IMMGFGEYERRNLIDGDSQYSTAARWDPSNGGILESTQHFAQPSMPCYLQNPQAEVLT