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MS003852 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003852
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTF-B3 domain-containing protein
Genome locationscaffold127:956291..956704
RNA-Seq ExpressionMS003852
SyntenyMS003852
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589940.1 putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3256.92Show/hide
Query:  MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANN
        +P +  I ++IG  S  +EKRLT SDV+E QGRL + KEFVT +L PMFN    +E+  EGI+VTVYN EGR++ M FK+WASKLYVL KGW  F K NN
Subjt:  MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANN

Query:  LTHAHAGEFLTLWMFRHRRTHGLCFAIILG
        LT    G ++TLWMFRH  TH +CFA+  G
Subjt:  LTHAHAGEFLTLWMFRHRRTHGLCFAIILG

KAG7023605.1 putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-3256.92Show/hide
Query:  MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANN
        +P +  I ++IG  S  +EKRLT SDV+E QGRL + KEFVT +L PMFN    +E+  EGI+VTVYN EGR++ M FK+WASKLYVL KGW  F K NN
Subjt:  MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANN

Query:  LTHAHAGEFLTLWMFRHRRTHGLCFAIILG
        LT    G ++TLWMFRH  TH +CFA+  G
Subjt:  LTHAHAGEFLTLWMFRHRRTHGLCFAIILG

KGN56101.1 hypothetical protein Csa_010492 [Cucumis sativus]1.1e-3152.94Show/hide
Query:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP
        G ++   PP+  I+++IG+CS  + K+LT +DV + QGRLA+ KEFV   L PMFN   ++E+L +GI V VY+ EGRE+ M FK+WASKLYVL K WK 
Subjt:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP

Query:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILG
        F K N+LT    GEF+++WMFRH  T  LCFAI+ G
Subjt:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILG

XP_022145065.1 putative B3 domain-containing protein At4g03170 [Momordica charantia]4.7e-7599.28Show/hide
Query:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP
        GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAE QGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP
Subjt:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP

Query:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILGTP
        FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILGTP
Subjt:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILGTP

XP_031736688.1 uncharacterized protein LOC116402065 [Cucumis sativus]3.8e-3253.68Show/hide
Query:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP
        G +   +PP+  I+++IG+CS  + K+L  +DV E QGRLA+ KEFVT+ L PMFN     ENL+ GI VTVY+ EGRE+ M FK W SKLYVL K W  
Subjt:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP

Query:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILG
        F K+NNLT    GEF+++WMFRH     LCFAI+ G
Subjt:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILG

TrEMBL top hitse value%identityAlignment
A0A0A0L7L0 TF-B3 domain-containing protein5.3e-3252.94Show/hide
Query:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP
        G ++   PP+  I+++IG+CS  + K+LT +DV + QGRLA+ KEFV   L PMFN   ++E+L +GI V VY+ EGRE+ M FK+WASKLYVL K WK 
Subjt:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP

Query:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILG
        F K N+LT    GEF+++WMFRH  T  LCFAI+ G
Subjt:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILG

A0A0A0LC65 TF-B3 domain-containing protein1.3e-3056.45Show/hide
Query:  IRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHA
        I+++IG+CS  + K+L  +DV E QGRLA+ KEFVT+ L PMFN     ENL+ GI VTVY+ EGRE+ M FK W SKLYVL K W  F K+NNLT    
Subjt:  IRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHA

Query:  GEFLTLWMFRHRRTHGLCFAIILG
        GEF+++WMFRH     LCFAI+ G
Subjt:  GEFLTLWMFRHRRTHGLCFAIILG

A0A2P6P5L3 Putative transcription factor B3-Domain family1.0e-2749.61Show/hide
Query:  MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANN
        +PPVP +R  I  CS+ +EK+LT SDV ++Q RLA+ KE V K L P+ N   ENE+LR GI+VT Y+ +G+E+ M FKIW  K++VL +GWK FC  + 
Subjt:  MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANN

Query:  LTHAHAGEFLTLWMFRHRRTHGLCFAIIL
        L      +F+T+WMFR+  T  LCF I L
Subjt:  LTHAHAGEFLTLWMFRHRRTHGLCFAIIL

A0A5D3BAS8 Putative B3 domain-containing protein1.5e-3154.62Show/hide
Query:  MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANN
        +PP+  I+++IG+CS  + K+LT +DV + QGRLA+ KEFV + L PMFN    +E L  GI VTVY+ EGRE+ MTF++W SKLYVL K WK F   N 
Subjt:  MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANN

Query:  LTHAHAGEFLTLWMFRHRRTHGLCFAIILG
        LT     EF+TLWMFRH   H LCFAI+ G
Subjt:  LTHAHAGEFLTLWMFRHRRTHGLCFAIILG

A0A6J1CTE7 putative B3 domain-containing protein At4g031702.3e-7599.28Show/hide
Query:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP
        GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAE QGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP
Subjt:  GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKP

Query:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILGTP
        FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILGTP
Subjt:  FCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILGTP

SwissProt top hitse value%identityAlignment
Q9LM90 B3 domain-containing protein At1g206007.4e-0736.36Show/hide
Query:  DVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIW-ASKLYVLMKGWKPF
        +V  + SR  +K+L  SDV  +Q RL + KE V + + P     +E+E+  +G++V+VY  +G    M FK+W   K  VL  GW  F
Subjt:  DVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIW-ASKLYVLMKGWKPF

Q9ZR14 Putative B3 domain-containing protein At4g031701.7e-1440.35Show/hide
Query:  SRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIW-ASKLYVLMKGWKPFCKANNLTHAHAGEFLTLW
        SR  +K+L  SDV ++Q  L + KE V + + P     +++EN  +GI+V+VY  +G+   M FK+W   K  VL  GWK F +   L  +   +F+T+W
Subjt:  SRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIW-ASKLYVLMKGWKPFCKANNLTHAHAGEFLTLW

Query:  MFRHRRTHGLCFAI
        MFRH +T  LCFAI
Subjt:  MFRHRRTHGLCFAI

Q9ZR15 Putative B3 domain-containing protein At4g031601.1e-1341.59Show/hide
Query:  RAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENL-REGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM
        R   ++L  SDV + Q RL +GKE V K    M +   + E L  +G+ V+VY   G    M  KIW     VL  GWK F K+  L   H  +FLT+WM
Subjt:  RAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENL-REGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM

Query:  FRHRRTHGLCFAI
        FRH++T  +CFAI
Subjt:  FRHRRTHGLCFAI

Arabidopsis top hitse value%identityAlignment
AT1G20600.1 AP2/B3-like transcriptional factor family protein5.3e-0836.36Show/hide
Query:  DVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIW-ASKLYVLMKGWKPF
        +V  + SR  +K+L  SDV  +Q RL + KE V + + P     +E+E+  +G++V+VY  +G    M FK+W   K  VL  GW  F
Subjt:  DVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIW-ASKLYVLMKGWKPF

AT4G03160.1 BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1)7.6e-1541.59Show/hide
Query:  RAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENL-REGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM
        R   ++L  SDV + Q RL +GKE V K    M +   + E L  +G+ V+VY   G    M  KIW     VL  GWK F K+  L   H  +FLT+WM
Subjt:  RAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENL-REGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM

Query:  FRHRRTHGLCFAI
        FRH++T  +CFAI
Subjt:  FRHRRTHGLCFAI

AT4G03170.1 AP2/B3-like transcriptional factor family protein1.2e-1540.35Show/hide
Query:  SRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIW-ASKLYVLMKGWKPFCKANNLTHAHAGEFLTLW
        SR  +K+L  SDV ++Q  L + KE V + + P     +++EN  +GI+V+VY  +G+   M FK+W   K  VL  GWK F +   L  +   +F+T+W
Subjt:  SRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIW-ASKLYVLMKGWKPFCKANNLTHAHAGEFLTLW

Query:  MFRHRRTHGLCFAI
        MFRH +T  LCFAI
Subjt:  MFRHRRTHGLCFAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCGAAGAGCGTCGGGGGATGCCACCGGTGCCGGCGATCAGGGACGTGATCGGGCAGTGCAGCCGGGCGTACGAGAAGAGGCTGACGGTAAGCGACGTGGCGGAGGAGCA
AGGGCGGCTGGCGATTGGGAAGGAATTCGTGACCAAATATTTGGCTCCAATGTTTAACAACAAGGATGAGAATGAGAATCTGAGAGAGGGAATTGAAGTGACGGTTTATA
ACAGAGAAGGGAGAGAATTCGGTATGACGTTTAAGATTTGGGCTTCAAAATTGTACGTGCTCATGAAAGGGTGGAAGCCGTTCTGTAAAGCCAATAATTTGACGCACGCC
CACGCCGGAGAGTTCCTCACTTTATGGATGTTTCGCCATCGTCGCACCCACGGCCTCTGTTTTGCCATTATTCTGGGAACACCC
mRNA sequenceShow/hide mRNA sequence
GGCGAAGAGCGTCGGGGGATGCCACCGGTGCCGGCGATCAGGGACGTGATCGGGCAGTGCAGCCGGGCGTACGAGAAGAGGCTGACGGTAAGCGACGTGGCGGAGGAGCA
AGGGCGGCTGGCGATTGGGAAGGAATTCGTGACCAAATATTTGGCTCCAATGTTTAACAACAAGGATGAGAATGAGAATCTGAGAGAGGGAATTGAAGTGACGGTTTATA
ACAGAGAAGGGAGAGAATTCGGTATGACGTTTAAGATTTGGGCTTCAAAATTGTACGTGCTCATGAAAGGGTGGAAGCCGTTCTGTAAAGCCAATAATTTGACGCACGCC
CACGCCGGAGAGTTCCTCACTTTATGGATGTTTCGCCATCGTCGCACCCACGGCCTCTGTTTTGCCATTATTCTGGGAACACCC
Protein sequenceShow/hide protein sequence
GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHA
HAGEFLTLWMFRHRRTHGLCFAIILGTP