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MS003861 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003861
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
Genome locationscaffold127:1070419..1070583
RNA-Seq ExpressionMS003861
SyntenyMS003861
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR001280 - Photosystem I PsaA/PsaB
IPR036408 - Photosystem I PsaA/PsaB superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AET45342.1 photosystem I P700 chlorophyll a apoprotein A1 [Pinus virginiana]1.1e-0861.4Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+N+ S+V+FHFS    SD+W NINDQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
AXQ01771.1 photosystem I P700 chlorophyll a apoprotein A1 [Pinus contorta]1.1e-0861.4Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+N+ S+V+FHFS    SD+W NINDQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
PHT34494.1 Photosystem I chlorophyll a apoprotein A1 [Capsicum baccatum]1.5e-0859.65Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+NS S+V+FHFS     D+WDN++DQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
QSJ48426.1 photosystem I P700 chlorophyll a apoprotein A1 [Medicago secundiflora]5.0e-0963.16Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+NS S+V+FHFS    SD+W NINDQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
YP_009407260.1 photosystem I P700 chlorophyll a apoprotein A1 [Drosera regia]1.5e-0863.16Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+NS SIV+FHFS    SD+W NI+DQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
TrEMBL top hitse value%identityAlignment
A0A1Z2RQV6 Photosystem I P700 chlorophyll a apoprotein A17.1e-0963.16Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+NS SIV+FHFS    SD+W NI+DQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
A0A2G2VNE4 Photosystem I chlorophyll a apoprotein A17.1e-0959.65Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+NS S+V+FHFS     D+WDN++DQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
A0A346LYC6 Photosystem I P700 chlorophyll a apoprotein A15.4e-0961.4Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+N+ S+V+FHFS    SD+W NINDQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
G8IT21 Photosystem I P700 chlorophyll a apoprotein A15.4e-0961.4Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+N+ S+V+FHFS    SD+W NINDQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
G8J5S1 Photosystem I P700 chlorophyll a apoprotein A15.4e-0961.4Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+N+ S+V+FHFS    SD+W NINDQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
SwissProt top hitse value%identityAlignment
P05310 Photosystem I P700 chlorophyll a apoprotein A13.3e-1161.4Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+NS S+V+FHFS    SD+W  INDQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
P41639 Photosystem I P700 chlorophyll a apoprotein A15.6e-1159.65Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+N+ S+V+FHFS    SD+W NI+DQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
Q09FW1 Photosystem I P700 chlorophyll a apoprotein A15.6e-1159.65Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+N+ S+V+FHFS    SD+W +INDQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
Q1KXV9 Photosystem I P700 chlorophyll a apoprotein A19.5e-1159.65Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+NS S+V+FHFS    SD+W +I+DQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
Q3V534 Photosystem I P700 chlorophyll a apoprotein A19.5e-1159.65Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+NS S+V+FHFS    SD+W +I+DQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
Arabidopsis top hitse value%identityAlignment
ATCG00350.1 Photosystem I, PsaA/PsaB protein1.5e-1157.89Show/hide
Query:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI
        S WD V   LFWM+N+ S+V+FHFS    SD+W +I+DQGVVT +  GNFAQS I I
Subjt:  STWDRVCFRLFWMHNSTSIVMFHFS--KCSDIWDNINDQGVVTMV--GNFAQSFINI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCACTTGGGATCGTGTCTGTTTTAGGCTATTTTGGATGCACAATTCAACTTCGATAGTAATGTTCCATTTCAGTAAATGTTCAGATATTTGGGATAATATAAATGATCA
AGGAGTAGTAACTATGGTAGGAAACTTTGCGCAGAGTTTCATTAATATA
mRNA sequenceShow/hide mRNA sequence
TCCACTTGGGATCGTGTCTGTTTTAGGCTATTTTGGATGCACAATTCAACTTCGATAGTAATGTTCCATTTCAGTAAATGTTCAGATATTTGGGATAATATAAATGATCA
AGGAGTAGTAACTATGGTAGGAAACTTTGCGCAGAGTTTCATTAATATA
Protein sequenceShow/hide protein sequence
STWDRVCFRLFWMHNSTSIVMFHFSKCSDIWDNINDQGVVTMVGNFAQSFINI