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MS003888 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003888
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA repair protein UVH3
Genome locationscaffold127:1294081..1294199
RNA-Seq ExpressionMS003888
SyntenyMS003888
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588970.1 Potassium transporter 8, partial [Cucurbita argyrosperma subsp. sororia]2.9e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR ER    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
KAG7015248.1 DNA repair protein UVH3 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR ER    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
XP_022150081.1 DNA repair protein UVH3 isoform X3 [Momordica charantia]2.9e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR ER    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
XP_023529571.1 DNA repair protein UVH3 isoform X1 [Cucurbita pepo subsp. pepo]2.9e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR ER    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
XP_039139313.1 LOW QUALITY PROTEIN: DNA repair protein UVH3 [Dioscorea cayenensis subsp. rotundata]2.2e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+MAMR ER    RNAH+LGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
TrEMBL top hitse value%identityAlignment
A0A6J1D7H7 DNA repair protein UVH3 isoform X21.4e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR ER    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
A0A6J1D8H5 DNA repair protein UVH3 isoform X11.4e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR ER    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
A0A6J1DAD7 DNA repair protein UVH3 isoform X31.4e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR ER    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
A0A6J1ERW5 DNA repair protein UVH3 isoform X11.4e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR ER    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
K7K2J0 Uncharacterized protein2.4e-0674.42Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQFV AMR E+    RNAHLLGFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
SwissProt top hitse value%identityAlignment
Q9ATY5 DNA repair protein UVH34.2e-0867.44Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR E+    +NAHL+GFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
Arabidopsis top hitse value%identityAlignment
AT3G28030.1 5'-3' exonuclease family protein3.0e-0967.44Show/hide
Query:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP
        +ASIWMVQF+ AMR E+    +NAHL+GFFRRI K  FLRTKP
Subjt:  EASIWMVQFVMAMRGER----RNAHLLGFFRRIGKRPFLRTKP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGGCGAGTATTTGGATGGTACAATTCGTAATGGCAATGCGTGGCGAAAGAAGAAACGCTCATTTACTTGGTTTCTTTCGCCGAATTGGTAAGCGTCCATTCTTGCGGAC
TAAGCCC
mRNA sequenceShow/hide mRNA sequence
GAGGCGAGTATTTGGATGGTACAATTCGTAATGGCAATGCGTGGCGAAAGAAGAAACGCTCATTTACTTGGTTTCTTTCGCCGAATTGGTAAGCGTCCATTCTTGCGGAC
TAAGCCC
Protein sequenceShow/hide protein sequence
EASIWMVQFVMAMRGERRNAHLLGFFRRIGKRPFLRTKP