CuGenDBv2

Gene ID	MS003889
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S30
Genome location	scaffold127:1295065..1295487
RNA-Seq Expression	MS003889
Synteny	MS003889
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0055085 - transmembrane transport (biological process) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domains	IPR006846 - Ribosomal protein S30

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAA2953813.1 40s ribosomal s30 [Olea europaea subsp. europaea]

3.8e-24

100

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

EEE65180.1 hypothetical protein OsJ_20291 [Oryza sativa Japonica Group]

7.6e-25

100

Show/hide

Query:  PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

ESR64610.1 hypothetical protein CICLE_v10009868mg [Citrus clementina]

3.8e-24

100

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KAG2375776.1 40S ribosomal protein [Vigna angularis]

7.6e-25

100

Show/hide

Query:  PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KAG6599498.1 40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-24

100

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

TrEMBL top hits

e value

%identity

Alignment

A0A368PSS0 40S ribosomal protein S30

1.8e-24

100

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A6J1KXK5 40S ribosomal protein S30

1.8e-24

100

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A7I8KYK5 40S ribosomal protein S30

1.8e-24

100

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

B9FRR9 40S ribosomal protein S30

3.7e-25

100

Show/hide

Query:  PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

M5WRX6 40S ribosomal protein S30

1.8e-24

100

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

SwissProt top hits

e value

%identity

Alignment

P49689 40S ribosomal protein S30

4.2e-26

96.72

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

P62860 40S ribosomal protein S30

4.2e-18

79.31

Show/hide

Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62861 40S ribosomal protein S30

4.2e-18

79.31

Show/hide

Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62862 40S ribosomal protein S30

4.2e-18

79.31

Show/hide

Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62866 40S ribosomal protein S30

4.2e-18

79.31

Show/hide

Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

Arabidopsis top hits

e value

%identity

Alignment

AT2G19750.1 Ribosomal protein S30 family protein

3.0e-27

96.72

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT4G29390.1 Ribosomal protein S30 family protein

3.0e-27

96.72

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT5G56670.1 Ribosomal protein S30 family protein

3.0e-27

96.72

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

CCAGGGAAGGTTCACGGATCTCTGGCTCGTGCCGGGAAGGTTAGAGGTCAAACTCCGAAAGTAGCAAAGCAAGACAAGAAGAAGAAGCCCCGTGGACGCGCGCACAAGCG
TATGCAATACAACCGCAGATTCGTCACTGCTGTGGTTGGATTTGGAAAGAAGAGGGGACCCAACTCCTCCGAGAAG

mRNA sequence

Show/hide mRNA sequence

CCAGGGAAGGTTCACGGATCTCTGGCTCGTGCCGGGAAGGTTAGAGGTCAAACTCCGAAAGTAGCAAAGCAAGACAAGAAGAAGAAGCCCCGTGGACGCGCGCACAAGCG
TATGCAATACAACCGCAGATTCGTCACTGCTGTGGTTGGATTTGGAAAGAAGAGGGGACCCAACTCCTCCGAGAAG

Protein sequence

Show/hide protein sequence

PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

MS003889 (gene) of Bitter gourd (TR) v1 genome