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MS003925 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003925
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBeta-galactosidase
Genome locationscaffold127:1625171..1625538
RNA-Seq ExpressionMS003925
SyntenyMS003925
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0005773 - vacuole (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0004565 - beta-galactosidase activity (molecular function)
InterPro domainsIPR001944 - Glycoside hydrolase, family 35
IPR008979 - Galactose-binding-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659980.2 beta-galactosidase [Cucumis sativus]2.7e-3478.49Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS
        ALDMSSMGKG+IWINGQSIG H PAY A GSC KC+Y G FN+KKC SN GEPSQRWY+V RAWL  SGNVLVIFEEW GNP+GISLV RS+S
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS

XP_022147712.1 beta-galactosidase-like [Momordica charantia]8.1e-3986.02Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS
        ALDMSSMGKG+IWINGQSIG H PAYIAHGSC KCSY GTFN+KKCQS  GEPSQRWY+V RAWLNP+GNVLVIFEEW GNPDGISLV RSVS
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS

XP_022147714.1 beta-galactosidase-like isoform X1 [Momordica charantia]8.4e-3681.52Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV
        ALDMSSM KG+IWING+SIG H PAYIA GSC KCSYVG FN+KKC SN GEPSQRWY+V  AWLNPSGNVLV+FEEW GNPDGISLV RSV
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV

XP_022147715.1 beta-galactosidase-like isoform X2 [Momordica charantia]8.4e-3681.52Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV
        ALDMSSM KG+IWING+SIG H PAYIA GSC KCSYVG FN+KKC SN GEPSQRWY+V  AWLNPSGNVLV+FEEW GNPDGISLV RSV
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV

XP_022147716.1 beta-galactosidase-like [Momordica charantia]2.4e-3577.42Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS
        ALDMSSMGKG++W+NGQSIG H PAYIA GSC KC+Y G F++KKC SN GEPSQ+WY+V RAWLNPSGNVLV+FEEW GNP GISLV RSVS
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS

TrEMBL top hitse value%identityAlignment
A0A5D3CEY5 Beta-galactosidase2.9e-3476.34Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS
        ALDMSSMGKG+IWINGQSIG H PAY A GSC KC+Y G FN+KKC SN GEPSQRWY++ RAWL  SGN+LVIFEEW GNP+GISLV RS+S
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS

A0A6J1D0X4 Beta-galactosidase4.0e-3681.52Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV
        ALDMSSM KG+IWING+SIG H PAYIA GSC KCSYVG FN+KKC SN GEPSQRWY+V  AWLNPSGNVLV+FEEW GNPDGISLV RSV
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV

A0A6J1D1U4 Beta-galactosidase4.0e-3681.52Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV
        ALDMSSM KG+IWING+SIG H PAYIA GSC KCSYVG FN+KKC SN GEPSQRWY+V  AWLNPSGNVLV+FEEW GNPDGISLV RSV
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV

A0A6J1D352 Beta-galactosidase3.9e-3986.02Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS
        ALDMSSMGKG+IWINGQSIG H PAYIAHGSC KCSY GTFN+KKCQS  GEPSQRWY+V RAWLNP+GNVLVIFEEW GNPDGISLV RSVS
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS

A0A6J1D372 Beta-galactosidase1.2e-3577.42Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS
        ALDMSSMGKG++W+NGQSIG H PAYIA GSC KC+Y G F++KKC SN GEPSQ+WY+V RAWLNPSGNVLV+FEEW GNP GISLV RSVS
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS

SwissProt top hitse value%identityAlignment
P45582 Beta-galactosidase3.8e-3166.67Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS
        ALDM++MGKG+IWINGQSIG + PAY A GSC  C Y GT+N+KKC SN GE SQRWY+V R+WL P+GN LV+ EEW G+P GIS+V RSV+
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS

P48981 Beta-galactosidase2.6e-3264.52Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS
        ALDM SMGKG+IWINGQS+G H P YIA GSC  CSY GT++ KKC+++ GEPSQRWY++ R+WL P+GN+LV+FEEW G+P  ISLV R  +
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSVS

Q9LFA6 Beta-galactosidase 21.7e-3163.74Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRS
        ALDM++MGKG++W+NG +IG H PAY A G+C +C+Y G +N+KKC S+ GEPSQRWY+V R+WL P GN+LVIFEEW G+P GISLV R+
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRS

Q9SCV0 Beta-galactosidase 128.4e-3162.64Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRS
        ALDM++MGKG++WINGQ+IG H PAY A G C +CSY GTF +KKC SN GE SQRWY+V R+WL P+ N++++ EEW G P+GISLV R+
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRS

Q9SCW1 Beta-galactosidase 17.6e-3267.39Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV
        A+DM SMGKG+IWINGQS+G H PAY A GSC +CSY GTF + KC  N GE SQRWY+V R+WL PSGN+LV+FEEW G+P+GI+LV R V
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV

Arabidopsis top hitse value%identityAlignment
AT3G13750.1 beta galactosidase 15.4e-3367.39Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV
        A+DM SMGKG+IWINGQS+G H PAY A GSC +CSY GTF + KC  N GE SQRWY+V R+WL PSGN+LV+FEEW G+P+GI+LV R V
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRSV

AT3G52840.1 beta-galactosidase 21.2e-3263.74Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRS
        ALDM++MGKG++W+NG +IG H PAY A G+C +C+Y G +N+KKC S+ GEPSQRWY+V R+WL P GN+LVIFEEW G+P GISLV R+
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRS

AT4G26140.1 beta-galactosidase 126.0e-3262.64Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRS
        ALDM++MGKG++WINGQ+IG H PAY A G C +CSY GTF +KKC SN GE SQRWY+V R+WL P+ N++++ EEW G P+GISLV R+
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEW-GNPDGISLVNRS

AT4G36360.1 beta-galactosidase 38.9e-2861.29Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEE-WGNPDGISLVNRSVS
        ALDM  MGKG+IW+NG+SIG +  A+ A G C  CSY GT+   KCQ+  G+P+QRWY+V RAWL PS N+LVIFEE  GNP  +SLV RSVS
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEE-WGNPDGISLVNRSVS

AT5G56870.1 beta-galactosidase 41.1e-2862.64Show/hide
Query:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEE-WGNPDGISLVNRS
        ALDM++MGKG++WING++IG H PAY A GSC +C+Y GTF+ KKC SN GE SQRWY+V R+WL  S N++V+FEE  G+P+GISLV R+
Subjt:  ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEE-WGNPDGISLVNRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCATTGGATATGAGCAGTATGGGTAAAGGTAAAATATGGATTAACGGTCAGAGCATCGGGGGCCATTCGCCTGCATACATCGCACACGGTAGTTGTCGCAAATGCAGCTA
TGTTGGAACCTTTAACAAGAAGAAATGTCAATCGAACCGTGGAGAACCATCTCAGAGATGGTATTATGTTTCCCGCGCTTGGTTGAACCCAAGTGGGAACGTATTGGTAA
TTTTTGAAGAATGGGGTAATCCTGATGGGATTTCTTTGGTTAACAGATCCGTGTCC
mRNA sequenceShow/hide mRNA sequence
GCATTGGATATGAGCAGTATGGGTAAAGGTAAAATATGGATTAACGGTCAGAGCATCGGGGGCCATTCGCCTGCATACATCGCACACGGTAGTTGTCGCAAATGCAGCTA
TGTTGGAACCTTTAACAAGAAGAAATGTCAATCGAACCGTGGAGAACCATCTCAGAGATGGTATTATGTTTCCCGCGCTTGGTTGAACCCAAGTGGGAACGTATTGGTAA
TTTTTGAAGAATGGGGTAATCCTGATGGGATTTCTTTGGTTAACAGATCCGTGTCC
Protein sequenceShow/hide protein sequence
ALDMSSMGKGKIWINGQSIGGHSPAYIAHGSCRKCSYVGTFNKKKCQSNRGEPSQRWYYVSRAWLNPSGNVLVIFEEWGNPDGISLVNRSVS