; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003929 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003929
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor PRE5-like
Genome locationscaffold1597:15855..16082
RNA-Seq ExpressionMS003929
SyntenyMS003929
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]1.5e-1157.58Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV
        +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + LDSMGV
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]1.5e-1157.58Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV
        +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + LDSMGV
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]9.1e-1253.95Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLLT
        +   ++K LV +LQTLLP+L+    ++ ++SA EILKETCDYI+KLQREVDDLS+RL + LDSMG+       LL+
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLLT

XP_021651758.1 transcription factor PRE3-like [Hevea brasiliensis]2.6e-1157.33Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLL
        +   +I +L+++LQ LLP+L+Q   S V  SA++ILKETC YIRKLQREVDDLS+RL QLLDSM V +    SL+
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLL

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]8.2e-1363.24Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQ--NIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV
        +A  D++ LV +LQTLLP L++  + DS V +SA +ILKETCDYI+KLQREVDDLS+RL + LDSMGV
Subjt:  MASSDIKKLVLRLQTLLPRLHQ--NIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV

TrEMBL top hitse value%identityAlignment
A0A067K4V8 BHLH domain-containing protein1.8e-1052.63Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLLT
        +  ++I  L+L+LQ LLP ++Q  DS V  SA++ILKETC YI KLQREVDDLS++L Q+LDSM +++    SL++
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLLT

A0A0A0LQ05 DNA binding protein4.4e-1253.95Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLLT
        +   ++K LV +LQTLLP+L+    ++ ++SA EILKETCDYI+KLQREVDDLS+RL + LDSMG+       LL+
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLLT

A0A1S3B0J1 transcription factor PRE5-like7.5e-1257.58Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV
        +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + LDSMGV
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV

A0A5A7SZP9 Transcription factor PRE5-like7.5e-1257.58Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV
        +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + LDSMGV
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV

A0A5D3BKI2 Transcription factor PRE5-like7.5e-1257.58Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV
        +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + LDSMGV
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV

SwissProt top hitse value%identityAlignment
F4JCN9 Transcription factor PRE42.2e-0852.38Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS
        +    I  LVL+L  LLP L  N  S   +SA+ +L+ETC YIR L +EVDDLS+RL QLL+S
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS

Q8GW32 Transcription factor PRE62.4e-0749.21Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS
        ++   I  LV +LQ L+P L +     V  SA+++L+ETC+YIR L REVDDLS RL +LL S
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS

Q9CA64 Transcription factor PRE36.3e-0845.45Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVA-STTSSSLLT
        ++   I  L+++LQ LLP L  +  S   +SAA +L++TC+YIR L REVDDLS+RL +LL +   A +    SLLT
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVA-STTSSSLLT

Q9LJX1 Transcription factor PRE51.7e-0855.36Show/hide
Query:  LVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM
        LV +L+  LP +H+   S   +SA+++L+ETC+YIRKL REVD+LS RL QLLDS+
Subjt:  LVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM

Q9LXG5 Transcription factor PRE21.8e-0743.75Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM
        ++   I  L+ +L+  +P + QN  S   +SA+++L+ETC+YIR L +E DDLS RL QLL+S+
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.7e-0849.21Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS
        ++   I  LV +LQ L+P L +     V  SA+++L+ETC+YIR L REVDDLS RL +LL S
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.5e-0945.45Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVA-STTSSSLLT
        ++   I  L+++LQ LLP L  +  S   +SAA +L++TC+YIR L REVDDLS+RL +LL +   A +    SLLT
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVA-STTSSSLLT

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-0955.36Show/hide
Query:  LVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM
        LV +L+  LP +H+   S   +SA+++L+ETC+YIRKL REVD+LS RL QLLDS+
Subjt:  LVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM

AT3G47710.1 BANQUO 31.5e-0952.38Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS
        +    I  LVL+L  LLP L  N  S   +SA+ +L+ETC YIR L +EVDDLS+RL QLL+S
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS

AT5G15160.1 BANQUO 21.3e-0843.75Show/hide
Query:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM
        ++   I  L+ +L+  +P + QN  S   +SA+++L+ETC+YIR L +E DDLS RL QLL+S+
Subjt:  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCGATATCAAAAAACTTGTCCTCAGATTGCAAACTTTACTCCCACGCCTTCACCAAAATATCGACTCCACGGTGGATATATCGGCGGCGGAGATATTGAA
GGAGACGTGTGATTACATAAGGAAATTGCAGAGGGAAGTGGACGACCTAAGTCAAAGGCTTTGCCAGCTCCTCGATTCAATGGGTGTTGCTTCAACAACTTCTTCATCTC
TTCTCACG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCCGATATCAAAAAACTTGTCCTCAGATTGCAAACTTTACTCCCACGCCTTCACCAAAATATCGACTCCACGGTGGATATATCGGCGGCGGAGATATTGAA
GGAGACGTGTGATTACATAAGGAAATTGCAGAGGGAAGTGGACGACCTAAGTCAAAGGCTTTGCCAGCTCCTCGATTCAATGGGTGTTGCTTCAACAACTTCTTCATCTC
TTCTCACG
Protein sequenceShow/hide protein sequence
MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGVASTTSSSLLT