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MS003942 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003942
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich protein 2-like
Genome locationscaffold1597:65008..65236
RNA-Seq ExpressionMS003942
SyntenyMS003942
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR002059 - Cold-shock protein, DNA-binding
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011658593.1 glycine-rich protein 2 [Cucumis sativus]8.7e-0748Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  + GG++L    S +      SL + +  EF+I  ESD RSKAVD+T  GE+     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

XP_022928350.1 glycine-rich protein 2-like [Cucurbita moschata]1.1e-0648Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  ++GG++L    S +      SL + +  EF I  E+D RSKAVD+T  GES     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

XP_022989065.1 glycine-rich protein 2-like [Cucurbita maxima]1.1e-0648Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  ++GG++L    S +      SL + +  EF I  E+D RSKAVD+T  GES     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

XP_023529790.1 glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]1.1e-0648Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  ++GG++L    S +      SL + +  EF I  E+D RSKAVD+T  GES     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

XP_038888820.1 glycine-rich protein 2-like [Benincasa hispida]8.7e-0748Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  + GG++L    S +      SL + +  EF+I  ESD RSKAVD+T  GE+     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

TrEMBL top hitse value%identityAlignment
A0A0A0K4M5 Uncharacterized protein4.2e-0748Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  + GG++L    S +      SL + +  EF+I  ESD RSKAVD+T  GE+     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

A0A5D3CLX3 Glycine-rich protein 2-like1.6e-0651.52Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHG
        G VKWFSDQKGYGFI  + GG++L    S +      SL + +  EF+I  ESD RSKAVD+T  G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHG

A0A6J1ERG9 glycine-rich protein 2-like5.5e-0748Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  ++GG++L    S +      SL + +  EF I  E+D RSKAVD+T  GES     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

A0A6J1HY03 glycine-rich protein 2-like1.2e-0646.67Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  ++GG++L    S +      SL + +  EF+I  E+D R KAVD+T  GES     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

A0A6J1JLC0 glycine-rich protein 2-like5.5e-0748Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG
        G VKWFSDQKGYGFI  ++GG++L    S +      SL + +  EF I  E+D RSKAVD+T  GES     +G
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG

SwissProt top hitse value%identityAlignment
P27484 Glycine-rich protein 21.3e-0542.03Show/hide
Query:  KREGNVKWFSDQKGYGFIFLSQGGKNLSSPVPHTEGV------SLDIRKKEEFVINMESDDRSKAVDLT
        + +G VKWFSDQKG+GFI    GG++L     H  G+      SL   +  EF +    D R+KAVD+T
Subjt:  KREGNVKWFSDQKGYGFIFLSQGGKNLSSPVPHTEGV------SLDIRKKEEFVINMESDDRSKAVDLT

Q38896 Cold shock domain-containing protein 44.2e-0433.33Show/hide
Query:  KREGNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLT------AHGESGQSRKQG
        +R+G VKWF  QKG+GFI  S GG +L    S +      SL   +  EF + +++  R KA++++        G SG     G
Subjt:  KREGNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLT------AHGESGQSRKQG

Q41188 Cold shock protein 26.5e-0536.36Show/hide
Query:  KREGNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLT
        +R+G+VKWF  QKG+GFI    GG +L    S +      SL   +  EF + +++++R KA+D++
Subjt:  KREGNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLT

Q94C69 Cold shock domain-containing protein 31.3e-0537.84Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQ
        G V WFSD KGYGFI    GG+ L    S +      SL + +  E+ I + SD ++KA+++TA G    ++K+
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQ

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 39.2e-0737.84Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQ
        G V WFSD KGYGFI    GG+ L    S +      SL + +  E+ I + SD ++KA+++TA G    ++K+
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQ

AT2G21060.1 glycine-rich protein 2B3.0e-0533.33Show/hide
Query:  KREGNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLT------AHGESGQSRKQG
        +R+G VKWF  QKG+GFI  S GG +L    S +      SL   +  EF + +++  R KA++++        G SG     G
Subjt:  KREGNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLT------AHGESGQSRKQG

AT4G36020.1 cold shock domain protein 11.5e-0437.84Show/hide
Query:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQ
        G V WF+  KGYGFI    G   L    S +      SL +    EF I   SD ++KAV++TA G  G  +K+
Subjt:  GNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQ

AT4G38680.1 glycine rich protein 24.6e-0636.36Show/hide
Query:  KREGNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLT
        +R+G+VKWF  QKG+GFI    GG +L    S +      SL   +  EF + +++++R KA+D++
Subjt:  KREGNVKWFSDQKGYGFIFLSQGGKNL---SSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAGGGAGGGGAATGTCAAGTGGTTCAGTGACCAGAAGGGGTATGGCTTCATTTTTTTGAGCCAAGGAGGCAAGAATCTTTCTTCACCTGTCCCCCATACCGAGGGGGT
TAGTCTCGATATTAGAAAGAAAGAAGAGTTTGTGATCAATATGGAATCTGATGACCGTTCCAAGGCTGTTGACCTCACTGCTCATGGTGAGTCAGGGCAATCAAGGAAGC
AGGGG
mRNA sequenceShow/hide mRNA sequence
AAGAGGGAGGGGAATGTCAAGTGGTTCAGTGACCAGAAGGGGTATGGCTTCATTTTTTTGAGCCAAGGAGGCAAGAATCTTTCTTCACCTGTCCCCCATACCGAGGGGGT
TAGTCTCGATATTAGAAAGAAAGAAGAGTTTGTGATCAATATGGAATCTGATGACCGTTCCAAGGCTGTTGACCTCACTGCTCATGGTGAGTCAGGGCAATCAAGGAAGC
AGGGG
Protein sequenceShow/hide protein sequence
KREGNVKWFSDQKGYGFIFLSQGGKNLSSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG