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MS003944 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003944
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMini zinc finger
Genome locationscaffold1597:85345..85629
RNA-Seq ExpressionMS003944
SyntenyMS003944
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006456 - ZF-HD homeobox protein, Cys/His-rich dimerisation domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036083.1 mini zinc finger protein 1 [Cucumis melo var. makuwa]1.9e-3885.58Show/hide
Query:  MMKKRQVVVKR-SEGSSNRNSSST--------SSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
        MMKKRQVVVKR SEG  + +SSST        SSS VRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
Subjt:  MMKKRQVVVKR-SEGSSNRNSSST--------SSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

XP_004137410.1 mini zinc finger protein 1 [Cucumis sativus]2.1e-3783.65Show/hide
Query:  MMKKRQVVVKRSE---GSS------NRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
        MMKKRQVVVKRS    GSS      N N + +SSS VRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGS+GALTCAACGCHRNFHRREVESEVVCE
Subjt:  MMKKRQVVVKRSE---GSS------NRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

XP_008442199.1 PREDICTED: mini zinc finger protein 1 [Cucumis melo]5.4e-3884.62Show/hide
Query:  MMKKRQVVVKRSE---GSS------NRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
        MMKKRQVVVKRS    GSS      N N + +SSS VRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
Subjt:  MMKKRQVVVKRSE---GSS------NRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

XP_022137501.1 mini zinc finger protein 2 [Momordica charantia]4.0e-41100Show/hide
Query:  MMKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
        MMKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
Subjt:  MMKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV

XP_022949221.1 mini zinc finger protein 1 [Cucurbita moschata]2.6e-4089.58Show/hide
Query:  MMKKRQVVVKRSEGSSNRN-SSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        MMKKRQV+VKR++GSSNRN SSSTSSS VRS+VRYGECQKNHAANIGGYAVDGC EFLA GEEGSNGALTCAACGCHRNFHRREVE+EVVCEY PP
Subjt:  MMKKRQVVVKRSEGSSNRN-SSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

TrEMBL top hitse value%identityAlignment
A0A5A7SZK7 Mini zinc finger protein 19.0e-3985.58Show/hide
Query:  MMKKRQVVVKR-SEGSSNRNSSST--------SSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
        MMKKRQVVVKR SEG  + +SSST        SSS VRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
Subjt:  MMKKRQVVVKR-SEGSSNRNSSST--------SSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

A0A5D3BJJ4 Mini zinc finger protein 12.6e-3884.62Show/hide
Query:  MMKKRQVVVKRSE---GSS------NRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
        MMKKRQVVVKRS    GSS      N N + +SSS VRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE
Subjt:  MMKKRQVVVKRSE---GSS------NRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

A0A6J1C6T5 mini zinc finger protein 21.9e-41100Show/hide
Query:  MMKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
        MMKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
Subjt:  MMKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV

A0A6J1GBE8 mini zinc finger protein 11.3e-4089.58Show/hide
Query:  MMKKRQVVVKRSEGSSNRN-SSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        MMKKRQV+VKR++GSSNRN SSSTSSS VRS+VRYGECQKNHAANIGGYAVDGC EFLA GEEGSNGALTCAACGCHRNFHRREVE+EVVCEY PP
Subjt:  MMKKRQVVVKRSEGSSNRN-SSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

A0A6J1K9G7 mini zinc finger protein 11.3e-4089.58Show/hide
Query:  MMKKRQVVVKRSEGSSNRN-SSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        MMKKRQV+VKR++GSSNRN SSSTSSS VRS+VRYGECQKNHAANIGGYAVDGC EFLA GEEGSNGALTCAACGCHRNFHRREVE+EVVCEY PP
Subjt:  MMKKRQVVVKRSEGSSNRN-SSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

SwissProt top hitse value%identityAlignment
B8BIU8 Mini zinc finger protein 11.2e-1958.02Show/hide
Query:  RSEGSSNRNSSSTSSSVV-----RSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVES
        RS      N S+ +++         VVRY ECQ+NHAA+IGG+AVDGCREF+A+G EG+  AL CAACGCHR+FHRREVE+
Subjt:  RSEGSSNRNSSSTSSSVV-----RSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVES

Q0J5F8 Mini zinc finger protein 42.4e-2053.85Show/hide
Query:  MKKRQVVVKRSEGSSNRNSSSTSSSV--VRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVC
        M KR V+++R E    + +++  +++      VRYGEC++NHAA +GG+AVDGCREFLA GEEG+ GAL CAACGCHR+FHRR V  +  C
Subjt:  MKKRQVVVKRSEGSSNRNSSSTSSSV--VRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVC

Q2Q493 Mini zinc finger protein 34.8e-2969.15Show/hide
Query:  MKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        MKKRQVV+K+ + S    SSS++       VRY ECQKNHAANIGGYAVDGCREF+A+   G + ALTCAACGCHRNFHRREV++EVVCEYSPP
Subjt:  MKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

Q9CA51 Mini zinc finger protein 17.8e-3270Show/hide
Query:  MMKKRQVVVKRSEGSSNRNS-----SSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        MMKKRQ+V+K+   +SN +S     SS+SSS   S VRY ECQKNHAANIGGYAVDGCREF+A G EG+  AL CAACGCHRNFHR+EV++EVVCEYSPP
Subjt:  MMKKRQVVVKRSEGSSNRNS-----SSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

Q9LJW5 Mini zinc finger protein 29.6e-3066.32Show/hide
Query:  MKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLAT-GEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        M+KRQVV++R+       SSST+SS+    VRYGECQKNHAA +GGYAVDGCREF+A+ GEEG+  ALTCAACGCHR+FHRRE+E+EVVC+ + P
Subjt:  MKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLAT-GEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

Arabidopsis top hitse value%identityAlignment
AT1G18835.1 mini zinc finger3.4e-3069.15Show/hide
Query:  MKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        MKKRQVV+K+ + S    SSS++       VRY ECQKNHAANIGGYAVDGCREF+A+   G + ALTCAACGCHRNFHRREV++EVVCEYSPP
Subjt:  MKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

AT1G74660.1 mini zinc finger 15.6e-3370Show/hide
Query:  MMKKRQVVVKRSEGSSNRNS-----SSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        MMKKRQ+V+K+   +SN +S     SS+SSS   S VRY ECQKNHAANIGGYAVDGCREF+A G EG+  AL CAACGCHRNFHR+EV++EVVCEYSPP
Subjt:  MMKKRQVVVKRSEGSSNRNS-----SSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

AT2G02540.1 homeobox protein 211.6e-1962.5Show/hide
Query:  VVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSP
        V++Y EC KNHAA +GG A+DGC EF+ +GEEGS  ALTC+ C CHRNFHRRE E E    +SP
Subjt:  VVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSP

AT3G28917.1 mini zinc finger 26.8e-3166.32Show/hide
Query:  MKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLAT-GEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP
        M+KRQVV++R+       SSST+SS+    VRYGECQKNHAA +GGYAVDGCREF+A+ GEEG+  ALTCAACGCHR+FHRRE+E+EVVC+ + P
Subjt:  MKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLAT-GEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP

AT4G24660.1 homeobox protein 226.0e-1957.33Show/hide
Query:  EGSSNRNSSSTS-SSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVES
        EG+++        S  V + +RY EC KNHA NIGG+AVDGC EF+ +GE+G+  AL CAACGCHRNFHR+E ES
Subjt:  EGSSNRNSSSTS-SSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGAAAAGACAAGTTGTAGTAAAAAGATCAGAGGGATCATCGAATAGAAACAGCAGCAGTACTTCATCTTCAGTGGTGAGAAGTGTGGTGAGATATGGGGAGTG
CCAGAAGAATCATGCGGCCAATATTGGAGGATATGCTGTGGATGGTTGCAGAGAATTCTTGGCCACTGGAGAAGAAGGCTCTAATGGAGCTCTTACTTGTGCTGCTTGTG
GCTGCCACAGGAATTTCCATAGAAGAGAAGTTGAATCTGAAGTGGTTTGTGAGTATTCTCCCCCT
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGAAAAGACAAGTTGTAGTAAAAAGATCAGAGGGATCATCGAATAGAAACAGCAGCAGTACTTCATCTTCAGTGGTGAGAAGTGTGGTGAGATATGGGGAGTG
CCAGAAGAATCATGCGGCCAATATTGGAGGATATGCTGTGGATGGTTGCAGAGAATTCTTGGCCACTGGAGAAGAAGGCTCTAATGGAGCTCTTACTTGTGCTGCTTGTG
GCTGCCACAGGAATTTCCATAGAAGAGAAGTTGAATCTGAAGTGGTTTGTGAGTATTCTCCCCCT
Protein sequenceShow/hide protein sequence
MMKKRQVVVKRSEGSSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP