; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003953 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003953
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold1597:132948..133913
RNA-Seq ExpressionMS003953
SyntenyMS003953
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0009644 - response to high light intensity (biological process)
GO:0009645 - response to low light intensity stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0019904 - protein domain specific binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137160.1 chlorophyll a-b binding protein P4, chloroplastic-like [Momordica charantia]1.7e-14499.6Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

XP_022949090.1 chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata]5.1e-13694.02Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        M+  M QASAAVFRP ASRSRFL GSSGKFNRALSVKPT S +P  FKVEAKKGEWLPGLPSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTS GIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDPWHNTI+QTLRG
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

XP_022998805.1 chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima]2.3e-13694.02Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        M+  M QASAAVFRP ASRSRFLSGSSGKFNRALSVKPT S +P  FKVEAKKGEWLPGLPSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTS GIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDPWHNT++QTLRG
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

XP_023524863.1 chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pepo]6.0e-13794.42Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        M+  M QASAAVFRP ASRSRFLSGSSGKFNRALSVKPT SS+P  FKVEAKKGEWLPGLPSP YLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTS GIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDPWHNTI+QTLRG
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

XP_038894825.1 chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida]4.6e-13794.42Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        MAT MTQASA+VFRPC  RSRFLS +SGKFNR LSVKPT SS+P  FKVEAKKGEWLPGLPSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTS GIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI+QTLRG
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

TrEMBL top hitse value%identityAlignment
A0A0A0LTE5 Chlorophyll a-b binding protein, chloroplastic5.5e-13693.2Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        MAT +TQASA VFRPCASRSRFLSGSSGKFNRALSVKPT SS+P  FKVEAKKGEWLPGLPSP YLDGSL GDNGFDPLGLAEDPENLRWY QAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGM+LPEV T+ GIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLR
        +EKEIANGRLAMLAFLGFIVQHNVTGKGPFDNF+QHISDPWHNTI+QTLR
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLR

A0A2C9UJS9 Chlorophyll a-b binding protein, chloroplastic4.1e-13189.24Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        MAT  TQASAAVFRPCASRSRFL+GSSGK NR +S KP ASS    FKVEAKKGEWLPGLPSPAYL+GSL GDNGFDPLGLAEDPENL+W++QAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFT IGIINVP+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN+VGYPGGIFNPLNF PTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKE+ANGRLAMLAFLGF+VQHNVTGKGPFDN LQH+SDPWHNTI+QTL G
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

A0A6J1C5V9 Chlorophyll a-b binding protein, chloroplastic8.5e-14599.6Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

A0A6J1GBT1 Chlorophyll a-b binding protein, chloroplastic2.5e-13694.02Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        M+  M QASAAVFRP ASRSRFL GSSGKFNRALSVKPT S +P  FKVEAKKGEWLPGLPSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTS GIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDPWHNTI+QTLRG
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

A0A6J1KDI3 Chlorophyll a-b binding protein, chloroplastic1.1e-13694.02Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        M+  M QASAAVFRP ASRSRFLSGSSGKFNRALSVKPT S +P  FKVEAKKGEWLPGLPSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTS GIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDPWHNT++QTLRG
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

SwissProt top hitse value%identityAlignment
P10708 Chlorophyll a-b binding protein 7, chloroplastic2.8e-6048.72Show/hide
Query:  SRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS
        +++ FL G   + ++  +     S+       +  +  W PG   P +LDGSL GD GFDPLGLA DPE+LRW  QAELV+ RWAMLG AG+ +PE+ T 
Subjt:  SRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS

Query:  IGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF-----EPTLEAKEKEIANGRLA
        IGI+N P WY AG+ EYF  ++TLF++E +L  + E RRW DI  PG VN DPIF    L   DVGYPGG+ F+PL +         E + KEI NGRLA
Subjt:  IGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF-----EPTLEAKEKEIANGRLA

Query:  MLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI
        MLA +G   QH  TG GP DN   H++DP H TI
Subjt:  MLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI

P13869 Chlorophyll a-b binding protein, chloroplastic3.6e-6048.51Show/hide
Query:  ASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFT
        A+++ FL G   + ++ ++   + S        +  +  W PG   P +LDGSL GD GFDPLGL  DPE+L+W  QAELV+ RWAMLG AG+ +PE  T
Subjt:  ASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFT

Query:  SIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF-----EPTLEAKEKEIANGRL
         IG++N P WY AG+ EYF  ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   DVGYPGG+ F+PL +         E + KEI NGRL
Subjt:  SIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF-----EPTLEAKEKEIANGRL

Query:  AMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI
        AMLA +G   QH  TG GP DN   H++DP H TI
Subjt:  AMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI

P27521 Chlorophyll a-b binding protein 4, chloroplastic1.7e-12183.13Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSL-PCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNG
        MAT  T ASA++FRPC S+ RFL+GSSG+ NR LS     SS     FKVEAKKGEWLPGL SP YL GSLAGDNGFDPLGLAEDPENL+W+VQAELVNG
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSL-PCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNG

Query:  RWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLE
        RWAMLGVAGMLLPEVFT IGIINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP  +VGYPGGIFNPLNF PT E
Subjt:  RWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLE

Query:  AKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQT
        AKEKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N LQH+SDPWHNTI+QT
Subjt:  AKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQT

Q36718 Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment)3.5e-8767.84Show/hide
Query:  KFNRALSVKPTASSLPCYFKVEA---KKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK
        +F   +   P AS  P   + +     KG WLPGL SPAYLDGSL GDNGFDPL LAEDPE+LRW+VQA++VNGRWAMLGVAGML+PEV T  G++N P+
Subjt:  KFNRALSVKPTASSLPCYFKVEA---KKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK

Query:  WYD-AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNV
        W    GK  YFASSST   +  +   YVEIRRWQDIKNPGSVNQDPIFK YSLPP++ GYPG +FNPLNF P LE KEKE+ANGRLAMLAFLGF+VQHNV
Subjt:  WYD-AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNV

Query:  TGKGPFDNFLQHISDPWHNTIIQTLRG
         GKGPF+N  QH++DPWHNTIIQT+ G
Subjt:  TGKGPFDNFLQHISDPWHNTIIQTLRG

Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic1.4e-12585.26Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR
        MAT  TQASAA+F PC  +SRFL GSSGK NR ++ +P   S    FKVEAKKGEWLPGL SP YL GSL GDNGFDPLGLAEDPENLRW+VQAELVNGR
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGR

Query:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA
        WAMLGVAGMLLPEVFTSIGIINVPKWY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  +VGYPGGIFNPLNF PTLEA
Subjt:  WAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEA

Query:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG
        KEKEIANGRLAMLAFLGFI+QHNVTGKGPFDN LQHISDPWHNTI+QTL G
Subjt:  KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG

Arabidopsis top hitse value%identityAlignment
AT1G19150.1 photosystem I light harvesting complex gene 66.8e-5449.22Show/hide
Query:  WLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIR
        W PG   P +LDGSL GD GFDPLGL  DP+ L+W+ QAEL++ RWAML V G+++PE    +G I    WYDAG  EYFA S+TLFV + +L  + E R
Subjt:  WLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIR

Query:  RWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNF------EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWH
        RW D+  PGSV+ +P +     P  DVGYPGG++           EP +  + KEI NGRLAMLAFLGF  Q   T + P +N + H++DP H
Subjt:  RWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNF------EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWH

AT1G45474.1 photosystem I light harvesting complex gene 52.0e-5851.9Show/hide
Query:  VEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEY-FASSSTLFVIEFI
        V  ++  WLPGL  P YLDG+LAGD GFDPLGL EDPE+L+WYVQAELV+ R+AMLGVAG+L  ++  + GI N+P WY+AG  ++ FAS+ TL V++F+
Subjt:  VEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEY-FASSSTLFVIEFI

Query:  LFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISD
        L  + E +R+ D  +PGS  ++  F    + +L   + GYPGG + NPL     ++     K KEI NGRLAM+A LGF VQ +VT  GP DN ++H+S+
Subjt:  LFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISD

Query:  PWHNTIIQTL
        PWH TIIQTL
Subjt:  PWHNTIIQTL

AT1G45474.2 photosystem I light harvesting complex gene 52.0e-5851.9Show/hide
Query:  VEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEY-FASSSTLFVIEFI
        V  ++  WLPGL  P YLDG+LAGD GFDPLGL EDPE+L+WYVQAELV+ R+AMLGVAG+L  ++  + GI N+P WY+AG  ++ FAS+ TL V++F+
Subjt:  VEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEY-FASSSTLFVIEFI

Query:  LFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISD
        L  + E +R+ D  +PGS  ++  F    + +L   + GYPGG + NPL     ++     K KEI NGRLAM+A LGF VQ +VT  GP DN ++H+S+
Subjt:  LFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISD

Query:  PWHNTIIQTL
        PWH TIIQTL
Subjt:  PWHNTIIQTL

AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A41.2e-12283.13Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSL-PCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNG
        MAT  T ASA++FRPC S+ RFL+GSSG+ NR LS     SS     FKVEAKKGEWLPGL SP YL GSLAGDNGFDPLGLAEDPENL+W+VQAELVNG
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSL-PCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNG

Query:  RWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLE
        RWAMLGVAGMLLPEVFT IGIINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP  +VGYPGGIFNPLNF PT E
Subjt:  RWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLE

Query:  AKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQT
        AKEKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N LQH+SDPWHNTI+QT
Subjt:  AKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQT

AT3G61470.1 photosystem I light harvesting complex gene 29.8e-6148.03Show/hide
Query:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGE---WLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELV
        MA+++  +SA       S   FL G   +  + L+V P  S      +  A   +   W PG   P +LDGSL GD GFDPLGL+ DP++L+W VQAE+V
Subjt:  MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGE---WLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELV

Query:  NGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF--
        + RWAMLG AG+ +PE  T IGI+N P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   DVGYPGG+ F+PL +  
Subjt:  NGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF--

Query:  ---EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI
               E + KEI NGRLAMLA +G   QH  TG GP DN   H++DP H TI
Subjt:  ---EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTGCCATGACCCAGGCTTCGGCTGCTGTCTTCCGACCATGCGCCTCGAGATCGAGGTTTCTTTCTGGGTCTTCTGGAAAATTTAACAGAGCTTTGTCTGTTAA
GCCAACAGCTTCTTCATTGCCCTGTTATTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTACCGGGTTTGCCATCGCCAGCTTACCTTGATGGCAGTCTTGCAGGTGACA
ATGGGTTTGATCCTCTGGGACTTGCAGAGGATCCTGAGAATTTGAGATGGTATGTGCAGGCAGAGCTTGTGAATGGCCGGTGGGCAATGCTTGGAGTTGCAGGCATGCTA
TTGCCTGAAGTTTTCACGAGTATAGGAATCATCAACGTACCGAAATGGTACGATGCTGGCAAAGCCGAGTATTTCGCATCATCCTCAACCCTGTTCGTGATCGAGTTCAT
TCTGTTCCATTATGTGGAAATCAGAAGGTGGCAGGACATAAAGAACCCAGGAAGTGTGAACCAAGATCCCATCTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGAT
ACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAGGAAAAGGAGATAGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTCATTGTT
CAACACAACGTGACTGGCAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCATAACACCATTATTCAAACACTAAGGGGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTGCCATGACCCAGGCTTCGGCTGCTGTCTTCCGACCATGCGCCTCGAGATCGAGGTTTCTTTCTGGGTCTTCTGGAAAATTTAACAGAGCTTTGTCTGTTAA
GCCAACAGCTTCTTCATTGCCCTGTTATTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTACCGGGTTTGCCATCGCCAGCTTACCTTGATGGCAGTCTTGCAGGTGACA
ATGGGTTTGATCCTCTGGGACTTGCAGAGGATCCTGAGAATTTGAGATGGTATGTGCAGGCAGAGCTTGTGAATGGCCGGTGGGCAATGCTTGGAGTTGCAGGCATGCTA
TTGCCTGAAGTTTTCACGAGTATAGGAATCATCAACGTACCGAAATGGTACGATGCTGGCAAAGCCGAGTATTTCGCATCATCCTCAACCCTGTTCGTGATCGAGTTCAT
TCTGTTCCATTATGTGGAAATCAGAAGGTGGCAGGACATAAAGAACCCAGGAAGTGTGAACCAAGATCCCATCTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGAT
ACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAGGAAAAGGAGATAGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTCATTGTT
CAACACAACGTGACTGGCAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCATAACACCATTATTCAAACACTAAGGGGA
Protein sequenceShow/hide protein sequence
MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML
LPEVFTSIGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIV
QHNVTGKGPFDNFLQHISDPWHNTIIQTLRG