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MS004014 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004014
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDof zinc finger Protein
Genome locationscaffold1597:535706..535870
RNA-Seq ExpressionMS004014
SyntenyMS004014
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003851 - Zinc finger, Dof-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584390.1 Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2083.33Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS
        CPRC SLDTKFCYYNNYN SQPRH CKTCRRYWTIGG LRN+PVGG  RK+ NS
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS

XP_004137607.1 dof zinc finger protein DOF1.7 [Cucumis sativus]1.0e-2085.71Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS-NNSK
        CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRNIPVGG TRKS  NSK
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS-NNSK

XP_022137287.1 dof zinc finger protein DOF5.8-like [Momordica charantia]2.7e-26100Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK
        CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK

XP_022924220.1 dof zinc finger protein 4-like [Cucurbita moschata]1.7e-2083.33Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS
        CPRC S DTKFCYYNNYNYSQPRH CKTCRRYWTIGG LRN+PVGG  RK+ NS
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS

XP_023520188.1 dof zinc finger protein DOF3.1-like [Cucurbita pepo subsp. pepo]1.3e-2083.33Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS
        CPRC S DTKFCYYNNYNYSQPRH CKTCRRYWTIGG LRN+PVGG  RK+ NS
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS

TrEMBL top hitse value%identityAlignment
A0A0A0LTJ9 Dof-type domain-containing protein4.9e-2185.71Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS-NNSK
        CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRNIPVGG TRKS  NSK
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS-NNSK

A0A1S3BDV3 dof zinc finger protein DOF3.4-like1.9e-2082.14Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS-NNSK
        CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRN+PVGG +RKS  NSK
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS-NNSK

A0A5D3BGN5 Dof zinc finger protein DOF3.4-like1.9e-2082.14Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS-NNSK
        CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRN+PVGG +RKS  NSK
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS-NNSK

A0A6J1C7U6 dof zinc finger protein DOF5.8-like1.3e-26100Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK
        CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK

A0A6J1EE71 dof zinc finger protein 4-like8.3e-2183.33Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS
        CPRC S DTKFCYYNNYNYSQPRH CKTCRRYWTIGG LRN+PVGG  RK+ NS
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS

SwissProt top hitse value%identityAlignment
O82155 Dof zinc finger protein DOF1.72.8e-2182.69Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN
        CPRC S +TKFCYYNNYN SQPRH CK CRRYWT GG LRNIPVGG TRKSN
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN

P38564 Dof zinc finger protein MNB1A4.7e-2179.63Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS
        CPRC S DTKFCYYNNYN SQPRH CK CRRYWT GGTLRN+PVGG TRK  +S
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS

Q39088 Dof zinc finger protein DOF3.43.6e-2180.39Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS
        CPRC S +TKFCYYNNYN+SQPRH CK CRRYWT GGTLR++PVGG TRKS
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS

Q8LDR0 Dof zinc finger protein DOF5.42.1e-2176.36Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK
        CPRC+SL+TKFCYYNNYN SQPRH CK CRRYWT GG LRN+PVGG  RK+  SK
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK

Q9FGD6 Dof zinc finger protein DOF5.83.6e-2178.85Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN
        CPRC S +TKFCYYNNYN+SQPRH CK+CRRYWT GGTLR+IPVGG +RKS+
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN

Arabidopsis top hitse value%identityAlignment
AT1G51700.1 DOF zinc finger protein 12.0e-2282.69Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN
        CPRC S +TKFCYYNNYN SQPRH CK CRRYWT GG LRNIPVGG TRKSN
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN

AT3G21270.1 DOF zinc finger protein 24.8e-2176.47Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS
        CPRC S +TKFCYYNNYN SQPRH CK+CRRYWT GG LRN+PVGG +RK+
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS

AT3G50410.1 OBF binding protein 12.6e-2280.39Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS
        CPRC S +TKFCYYNNYN+SQPRH CK CRRYWT GGTLR++PVGG TRKS
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKS

AT5G60850.1 OBF binding protein 41.5e-2276.36Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK
        CPRC+SL+TKFCYYNNYN SQPRH CK CRRYWT GG LRN+PVGG  RK+  SK
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK

AT5G66940.1 Dof-type zinc finger DNA-binding family protein2.6e-2278.85Show/hide
Query:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN
        CPRC S +TKFCYYNNYN+SQPRH CK+CRRYWT GGTLR+IPVGG +RKS+
Subjt:  CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCCCTAGGTGCCATTCTCTCGACACCAAATTCTGCTATTACAATAACTACAATTACTCCCAACCACGCCACCTCTGCAAGACCTGCCGCCGCTACTGGACCATCGGCGG
TACCCTCCGCAATATTCCGGTCGGCGGTGCAACCCGAAAATCCAACAACTCCAAA
mRNA sequenceShow/hide mRNA sequence
TGCCCTAGGTGCCATTCTCTCGACACCAAATTCTGCTATTACAATAACTACAATTACTCCCAACCACGCCACCTCTGCAAGACCTGCCGCCGCTACTGGACCATCGGCGG
TACCCTCCGCAATATTCCGGTCGGCGGTGCAACCCGAAAATCCAACAACTCCAAA
Protein sequenceShow/hide protein sequence
CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSK