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MS004020 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004020
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGTPase IMAP family member 1, putative
Genome locationscaffold1597:570890..571351
RNA-Seq ExpressionMS004020
SyntenyMS004020
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652531.1 hypothetical protein Csa_013077, partial [Cucumis sativus]2.7e-1552.81Show/hide
Query:  AVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAIPY
        A  +VE W+++++ FC+SSAI IATVSV I+ +LP  F+ LS+A+LLCF  V F +M   IF  +S+ILY  GG L  ++ FIATAIPY
Subjt:  AVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAIPY

KAF3947054.1 hypothetical protein CMV_026761 [Castanea mollissima]2.2e-0938.71Show/hide
Query:  EDEVEAGGGGGQPAAAVTVVEA------WEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVT
        +D V+ GG     AA   VV        W EIM+ FCL+SAI IA VSVQ++ +L   F  LS+A+L  F C    +  K  F   +++L   G F  VT
Subjt:  EDEVEAGGGGGQPAAAVTVVEA------WEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVT

Query:  ALFIATAIPYAPYFQTIIFLIYLI
        A F+A  IP+  Y +   + IY I
Subjt:  ALFIATAIPYAPYFQTIIFLIYLI

KAG6572911.1 hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia]5.1e-4669.87Show/hide
Query:  MWWVGNCIRKVRKCWELYLEDEVEAGGGGGQPA----AAVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIF
        M W  NCI K R+ WE  LED VE GGGGG P+    AA  +VE W++++VAFC+SSAIAIATVSVQIEKKLP  F FLS+ LLLCFG VAFGKMTK I 
Subjt:  MWWVGNCIRKVRKCWELYLEDEVEAGGGGGQPA----AAVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIF

Query:  HRVSRILYYGGGFLAVTALFIATAIPYAPYFQTIIFLIYLIFWFLFMLIAHKAPSS
         RVSRILY  GG L VTALFIA+AIPYA YFQ IIFLIYLIFW +FML+AHK+ SS
Subjt:  HRVSRILYYGGGFLAVTALFIATAIPYAPYFQTIIFLIYLIFWFLFMLIAHKAPSS

KAG6584385.1 hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1651.67Show/hide
Query:  EAGGGGGQ--PAAAVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAI
        EAG    Q  P +AV ++  WE +MV FC+ +AIAIATVSVQI+ KL   F+FLS AL+ CF      K+ K    RVS ILY+ GGF  VTA FIA AI
Subjt:  EAGGGGGQ--PAAAVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAI

Query:  PYAPYFQTIIFLIYLIFWFL
        PYA +FQ +   +YL+F F+
Subjt:  PYAPYFQTIIFLIYLIFWFL

OMO67964.1 hypothetical protein CCACVL1_20161 [Corchorus capsularis]1.3e-0943.7Show/hide
Query:  AAVTVVE-----AWEEIMVAFCLSSAIAIATVSVQI-EKKLPFEFRFLSVALLLCFGCVAFGK--MTKPIFHRVSRILYYGGGFLAVTALFIATAIPYAP
        AA+TV +     AWE+++VAFCL S+I IA +  QI    LP  F  LS+A+LL F C+  GK       FHRV+R+L   GGF  VTA FIA AIP+  
Subjt:  AAVTVVE-----AWEEIMVAFCLSSAIAIATVSVQI-EKKLPFEFRFLSVALLLCFGCVAFGK--MTKPIFHRVSRILYYGGGFLAVTALFIATAIPYAP

Query:  YFQTIIFLIYLIFWFLFML
        + Q     +Y I +   M+
Subjt:  YFQTIIFLIYLIFWFLFML

TrEMBL top hitse value%identityAlignment
A0A0A0LCY2 Uncharacterized protein5.8e-1951.85Show/hide
Query:  VVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAIPYAPYFQTIIFLIYLI
        +VE  +E+++ FCLSSAI IATVSVQ + KLP  F+FLS+A+L+CF  V F +M   IF  +S+ILY  GGFL  T  FIATAIPY  +F  I+ ++Y I
Subjt:  VVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAIPYAPYFQTIIFLIYLI

Query:  FWFLFMLI
        F  +F+++
Subjt:  FWFLFMLI

A0A0A0LQB6 Uncharacterized protein2.5e-3859.75Show/hide
Query:  WVGNCIRKVRKCWELYLEDEVEAGGGGGQPAAAVT----VVEAWEEIMVAFCLSSAIAIATVSVQIE--KKLPFEFRFLSVALLLCFGCVAFGKMTKPIF
        WVG+CIRK  + WE  L+ E E+G  GG     +T    +VE W+E++VA C+SSAI IATVSVQIE  K+LP  F+FLS+ +LLCFG V F KMTKPIF
Subjt:  WVGNCIRKVRKCWELYLEDEVEAGGGGGQPAAAVT----VVEAWEEIMVAFCLSSAIAIATVSVQIE--KKLPFEFRFLSVALLLCFGCVAFGKMTKPIF

Query:  HRVSRILYYGGGFLAVTALFIATAIPYAPYFQTIIFLIYLIFWFLFMLIA---HKAPSS
          VS+ILY  GGFL VTA FIATAIP+APYFQ IIF++YL+F F+FMLI    ++ PSS
Subjt:  HRVSRILYYGGGFLAVTALFIATAIPYAPYFQTIIFLIYLIFWFLFMLIA---HKAPSS

A0A0A0LQP5 Uncharacterized protein1.5e-1444.63Show/hide
Query:  VEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAIPY-APYFQTIIFLIYLI
        VE  +E ++  C+SSAI I T SVQI+ KLP  F+ LS+ +LLCF  V F +M + +F  +S ILY  G F+  T  FIATAI Y   +F TI+ ++Y I
Subjt:  VEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAIPY-APYFQTIIFLIYLI

Query:  F------WFLFMLIAHKAPSS
        F      + +F+ I H  PSS
Subjt:  F------WFLFMLIAHKAPSS

A0A0A0LSX4 Uncharacterized protein1.2e-1652.63Show/hide
Query:  AVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAIPYAPYFQT
        A  +VE W+++++ FC+SSAI IATVSV I+ +LP  F+ LS+A+LLCF  V F +M   IF  +S+ILY  GG L  ++ FIATAIPYA  F T
Subjt:  AVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVTALFIATAIPYAPYFQT

A0A7N2M5A3 Uncharacterized protein5.8e-1138.41Show/hide
Query:  EDEVEAGGGGGQPAAAVTVVEA------WEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVT
        +D V+ GG     AA + VV        W EIM+ FCL+SAI IA VSVQ+  +L   F  LS+A L  F C    +  +  F   +++L   G F  VT
Subjt:  EDEVEAGGGGGQPAAAVTVVEA------WEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGGFLAVT

Query:  ALFIATAIPYAPYFQTIIFLIYLIFWFLFMLIAHKAPS
        A FIA AIP+  Y +   + IY I  F   +   KA S
Subjt:  ALFIATAIPYAPYFQTIIFLIYLIFWFLFMLIAHKAPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCAGCATGTGGTGGGTTGGGAATTGCATCAGAAAAGTACGCAAGTGTTGGGAATTATATTTAGAGGATGAAGTAGAAGCTGGGGGCGGCGGGGGGCAACCGGCAGCGGC
GGTGACGGTAGTGGAGGCGTGGGAGGAGATAATGGTAGCGTTTTGCCTGTCGTCGGCCATAGCCATAGCCACAGTTTCAGTTCAGATAGAAAAAAAGCTACCTTTTGAGT
TTCGGTTTCTATCGGTTGCCCTGTTGCTGTGTTTTGGATGCGTGGCGTTTGGGAAGATGACAAAGCCCATATTCCATAGAGTTTCGCGAATATTGTATTATGGTGGCGGG
TTTTTGGCAGTCACGGCGTTGTTCATAGCCACAGCAATTCCATATGCACCATATTTTCAGACCATAATCTTCCTCATTTACTTAATCTTCTGGTTCCTTTTCATGCTCAT
CGCCCACAAGGCTCCTTCTAGT
mRNA sequenceShow/hide mRNA sequence
AGCAGCATGTGGTGGGTTGGGAATTGCATCAGAAAAGTACGCAAGTGTTGGGAATTATATTTAGAGGATGAAGTAGAAGCTGGGGGCGGCGGGGGGCAACCGGCAGCGGC
GGTGACGGTAGTGGAGGCGTGGGAGGAGATAATGGTAGCGTTTTGCCTGTCGTCGGCCATAGCCATAGCCACAGTTTCAGTTCAGATAGAAAAAAAGCTACCTTTTGAGT
TTCGGTTTCTATCGGTTGCCCTGTTGCTGTGTTTTGGATGCGTGGCGTTTGGGAAGATGACAAAGCCCATATTCCATAGAGTTTCGCGAATATTGTATTATGGTGGCGGG
TTTTTGGCAGTCACGGCGTTGTTCATAGCCACAGCAATTCCATATGCACCATATTTTCAGACCATAATCTTCCTCATTTACTTAATCTTCTGGTTCCTTTTCATGCTCAT
CGCCCACAAGGCTCCTTCTAGT
Protein sequenceShow/hide protein sequence
SSMWWVGNCIRKVRKCWELYLEDEVEAGGGGGQPAAAVTVVEAWEEIMVAFCLSSAIAIATVSVQIEKKLPFEFRFLSVALLLCFGCVAFGKMTKPIFHRVSRILYYGGG
FLAVTALFIATAIPYAPYFQTIIFLIYLIFWFLFMLIAHKAPSS