CuGenDBv2

Gene ID	MS004025
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transmembrane protein, putative
Genome location	scaffold1597:600792..601085
RNA-Seq Expression	MS004025
Synteny	MS004025
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KEH38020.1 transmembrane protein, putative [Medicago truncatula]

1.3e-10

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Query:  MATASSSPLLPDQQQ-------TPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKG
        MA+A+SS LL  QQQ       +P+    +SSGSIGPFFAVI VLT+L++LSC+L R+C+R  E TPL+S   R C   +K + +R   +DVEVG  G
Subjt:  MATASSSPLLPDQQQ-------TPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKG

TXG51537.1 hypothetical protein EZV62_024061 [Acer yangbiense]

4.9e-10

47.06

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Query:  SSSPLLPDQQQTP---------AGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRIC-SRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKGIDL
        +S+ LLP+ QQ P         +GG   S+GSIGPFFAVISVLTL +I+SC LGR C  RG+ ETPL S    +CL  +K + +R    +VE G K +  
Subjt:  SSSPLLPDQQQTP---------AGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRIC-SRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKGIDL

Query:  GD
        G+
Subjt:  GD

XP_012575091.1 uncharacterized protein LOC101512774 [Cicer arietinum]

6.4e-10

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Query:  MATASSSPLL-PDQQQTPAG----------GGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGV
        MATA+SS LL P QQQ  +G             QSSGSI PFFAVI +LT+L++LSC+L R+C+R  E TPL+S   R CL  LK + +    +DVEVG 
Subjt:  MATASSSPLL-PDQQQTPAG----------GGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGV

Query:  KG
         G
Subjt:  KG

XP_013463985.2 uncharacterized protein LOC25486805 [Medicago truncatula]

1.3e-10

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Query:  MATASSSPLLPDQQQ-------TPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKG
        MA+A+SS LL  QQQ       +P+    +SSGSIGPFFAVI VLT+L++LSC+L R+C+R  E TPL+S   R C   +K + +R   +DVEVG  G
Subjt:  MATASSSPLLPDQQQ-------TPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKG

XP_022137289.1 uncharacterized protein LOC111008787 [Momordica charantia]

3.6e-45

100

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Query:  MATASSSPLLPDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAAT
        MATASSSPLLPDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAAT
Subjt:  MATASSSPLLPDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAAT

TrEMBL top hits

e value

%identity

Alignment

A0A072VIN4 Transmembrane protein, putative

6.3e-11

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Query:  MATASSSPLLPDQQQ-------TPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKG
        MA+A+SS LL  QQQ       +P+    +SSGSIGPFFAVI VLT+L++LSC+L R+C+R  E TPL+S   R C   +K + +R   +DVEVG  G
Subjt:  MATASSSPLLPDQQQ-------TPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKG

A0A2N9HK44 Uncharacterized protein

4.8e-11

54.81

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Query:  MATASSSPLLPDQQQTPAGGG------------GQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVK--DVE
        MAT SSS  LP  QQ PAGG              QSSGSIGPFFAV+SVL LLSILSC LG+IC+R    +PL+S   R CL  +K +  RRC+   DVE
Subjt:  MATASSSPLLPDQQQTPAGGG------------GQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVK--DVE

Query:  VGVK
        VG+K
Subjt:  VGVK

A0A396JCL6 Uncharacterized protein

6.3e-11

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Query:  MATASSSPLLPDQQQ-------TPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKG
        MA+A+SS LL  QQQ       +P+    +SSGSIGPFFAVI VLT+L++LSC+L R+C+R  E TPL+S   R C   +K + +R   +DVEVG  G
Subjt:  MATASSSPLLPDQQQ-------TPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKG

A0A5C7H3R0 Uncharacterized protein

2.4e-10

47.06

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Query:  SSSPLLPDQQQTP---------AGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRIC-SRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKGIDL
        +S+ LLP+ QQ P         +GG   S+GSIGPFFAVISVLTL +I+SC LGR C  RG+ ETPL S    +CL  +K + +R    +VE G K +  
Subjt:  SSSPLLPDQQQTP---------AGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRIC-SRGSEETPLQS---RNCLRSLKGQLQRRCVKDVEVGVKGIDL

Query:  GD
        G+
Subjt:  GD

A0A6J1C6U1 uncharacterized protein LOC111008787

1.7e-45

100

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Query:  MATASSSPLLPDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAAT
        MATASSSPLLPDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAAT
Subjt:  MATASSSPLLPDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAAT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G23530.1 unknown protein

9.6e-04

40.38

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Query:  PDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQ
        PD    P+   G SSG+ G  F V++V+ +LS L+C  GR+C+R S     Q
Subjt:  PDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQ

AT1G74055.1 unknown protein

4.0e-10

41.67

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Query:  ATASSSPLLPDQQQTPAGGGGQ---------------------SSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSR-NCLRSLK-----GQL
        +++SSS L P QQQ     GG                      SS SIGPFFAVISVL +L++LSCFLGR C+R  + T L +  N L  +K     G L
Subjt:  ATASSSPLLPDQQQTPAGGGGQ---------------------SSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSR-NCLRSLK-----GQL

Query:  Q---RRCVK-DVEVGVKGID
        +   RRC+  DVE G K  D
Subjt:  Q---RRCVK-DVEVGVKGID

Sequences

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CDS sequence

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ATGGCCACCGCATCATCGTCACCACTGTTACCGGACCAGCAGCAGACGCCGGCGGGCGGCGGCGGGCAGTCCTCGGGTTCGATCGGACCGTTCTTCGCGGTGATCTCTGT
TCTAACTCTGCTGTCGATTCTATCTTGCTTTCTGGGTAGAATTTGTAGCCGCGGATCTGAAGAAACGCCATTACAGAGTAGAAATTGTTTGAGATCTTTGAAGGGGCAGT
TGCAGAGGCGCTGCGTTAAAGATGTTGAGGTGGGGGTAAAAGGAATTGATTTGGGTGATGGAGCTGCTGCAACT

mRNA sequence

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Protein sequence

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MATASSSPLLPDQQQTPAGGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSEETPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAAT

MS004025 (gene) of Bitter gourd (TR) v1 genome