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MS004038 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004038
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold1597:668511..668830
RNA-Seq ExpressionMS004038
SyntenyMS004038
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON63797.1 hypothetical protein TorRG33x02_275070 [Trema orientale]3.3e-1240.38Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSK-LILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFC
        HLFLHC+ + ++W KI K FG SW  PK C+D LL++  G     +   L +      LW L  ERN+R F+G+   +E  WD V  + +TW    K+F 
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSK-LILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFC

Query:  NFSF
        +FSF
Subjt:  NFSF

PON81686.1 hypothetical protein TorRG33x02_225050 [Trema orientale]2.2e-0830.84Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLV-VGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFC
        HLF+HC LA+++WS++   FG+ W +PK C++ LL    + S  + K  L    V  T W +  +RN+R F   +  +   W+ V    + W   ++ F 
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLV-VGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFC

Query:  NFSFVNI
        + SF ++
Subjt:  NFSFVNI

RVW25440.1 Preprotein translocase subunit SECY, chloroplastic [Vitis vinifera]3.8e-0835Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLV--VGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEF
        HLFLHC +   +W K+F + GL+W  P+  ED L+     +G+  + K +   + +++ LW +  ERN+R F+    T E  WDL+  F+S W   S  F
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLV--VGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEF

RVW91431.1 putative ribonuclease H protein [Vitis vinifera]5.0e-0836Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLV--VGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEF
        HLFLHC +   +W K+F + GL+W  P+  ED L+     +G+  + K  L +      LW +  ERN R F+  E T E  WDL+  F+S W   +  F
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLV--VGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEF

XP_030483308.1 uncharacterized protein LOC115699905 [Cannabis sativa]2.0e-0933.96Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFCN
        HLFL C LA  +W K+   F + W  P      ++  V G   K +  L R  V   +W +  ERN R F+GIE ++E  W+ V  + + W   +K F  
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFCN

Query:  FSFVNI
        FSF+++
Subjt:  FSFVNI

TrEMBL top hitse value%identityAlignment
A0A2P5CRZ5 Uncharacterized protein1.6e-1240.38Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSK-LILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFC
        HLFLHC+ + ++W KI K FG SW  PK C+D LL++  G     +   L +      LW L  ERN+R F+G+   +E  WD V  + +TW    K+F 
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSK-LILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFC

Query:  NFSF
        +FSF
Subjt:  NFSF

A0A803QEA6 Uncharacterized protein2.0e-1035.85Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFCN
        HLFL C LA+++W  +   F + W  P   +  L+  V GS  K    L R  V   LW +  ERN R F+G E++IE  WD +  + ++W   +K F N
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFCN

Query:  FSFVNI
         SF+++
Subjt:  FSFVNI

M5VH03 zf-RVT domain-containing protein (Fragment)2.2e-0932.41Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDAL-LQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKG-IETTIEGFWDLVYTFASTWCLLSKEF
        HLF+HC  +  +W ++    G+ W  PKGC + L + L +    K   IL   +V    W +  ERN++ F+G IE  +E  WD +  +AS W  +S +F
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDAL-LQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKG-IETTIEGFWDLVYTFASTWCLLSKEF

Query:  CNFSFVNI
         ++ +  I
Subjt:  CNFSFVNI

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)2.2e-0934.26Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDAL-LQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKG-IETTIEGFWDLVYTFASTWCLLSKEF
        HLF+HC  +  +W K+    G+ W  PKGC + L + L +    K   IL   +V    W +  ERNQR F+G I   +E  WD +  +AS W  +S +F
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDAL-LQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKG-IETTIEGFWDLVYTFASTWCLLSKEF

Query:  CNFSFVNI
         ++ +  I
Subjt:  CNFSFVNI

M5XV38 zf-RVT domain-containing protein2.2e-0934.26Show/hide
Query:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDAL-LQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKG-IETTIEGFWDLVYTFASTWCLLSKEF
        HLF+HC  +  +W K+    G+ W  PKGC + L + L +    K   IL   +V    W +  ERNQR F+G I   +E  WD +  +AS W  +S +F
Subjt:  HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDAL-LQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKG-IETTIEGFWDLVYTFASTWCLLSKEF

Query:  CNFSFVNI
         ++ +  I
Subjt:  CNFSFVNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CATTTGTTTTTGCATTGTGACCTTGCCAATGCTATGTGGTCCAAAATTTTCAAGATTTTTGGCTTAAGTTGGTTCTTCCCCAAAGGCTGTGAGGATGCATTGCTGCAGCT
CGTGGTTGGTTCTCCCTTCAAGAGTAAGTTGATTCTCTGTCGTAATGTGGTTTCAGTGACATTATGGAGACTTCGCTTTGAAAGAAATCAGAGAAATTTCAAAGGCATTG
AGACTACTATTGAGGGCTTTTGGGATCTTGTCTACACTTTTGCTTCTACTTGGTGTCTTCTCTCTAAAGAGTTTTGTAATTTCAGCTTTGTGAATATT
mRNA sequenceShow/hide mRNA sequence
CATTTGTTTTTGCATTGTGACCTTGCCAATGCTATGTGGTCCAAAATTTTCAAGATTTTTGGCTTAAGTTGGTTCTTCCCCAAAGGCTGTGAGGATGCATTGCTGCAGCT
CGTGGTTGGTTCTCCCTTCAAGAGTAAGTTGATTCTCTGTCGTAATGTGGTTTCAGTGACATTATGGAGACTTCGCTTTGAAAGAAATCAGAGAAATTTCAAAGGCATTG
AGACTACTATTGAGGGCTTTTGGGATCTTGTCTACACTTTTGCTTCTACTTGGTGTCTTCTCTCTAAAGAGTTTTGTAATTTCAGCTTTGTGAATATT
Protein sequenceShow/hide protein sequence
HLFLHCDLANAMWSKIFKIFGLSWFFPKGCEDALLQLVVGSPFKSKLILCRNVVSVTLWRLRFERNQRNFKGIETTIEGFWDLVYTFASTWCLLSKEFCNFSFVNI