; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004044 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004044
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Genome locationscaffold1597:722067..722567
RNA-Seq ExpressionMS004044
SyntenyMS004044
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030163 - protein catabolic process (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR003769 - Adaptor protein ClpS, core
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
IPR022935 - ATP-dependent Clp protease adaptor protein ClpS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137466.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus]2.9e-6995.59Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKP IEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_008456997.1 PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo]7.7e-7096.32Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_022136971.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia]8.2e-72100Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_022994956.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima]2.7e-6794.12Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRS L MLSVAELGKGGGLLEKPT EKTTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_038894047.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida]7.7e-7097.06Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRS LMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRK RKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

TrEMBL top hitse value%identityAlignment
A0A0A0LSY6 ClpS domain-containing protein1.4e-6995.59Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKP IEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A1S3C561 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like3.7e-7096.32Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A6J1C511 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X14.0e-72100Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A6J1GS56 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic5.0e-6793.38Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRS L MLSVAELGKGGGLLEKP  EKTTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A6J1K0P0 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like1.3e-6794.12Show/hide
Query:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN
        GDKYYFHKQCRNRS L MLSVAELGKGGGLLEKPT EKTTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYN
Subjt:  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN

Query:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        GM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  GMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

SwissProt top hitse value%identityAlignment
A0A2K3CNL6 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic2.8e-2252.29Show/hide
Query:  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLS
        GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+D+AV  MQEAH  G+++V+ C Q +AE +C  LR NGL S
Subjt:  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLS

Query:  SIEPASDGC
        +IEP   GC
Subjt:  SIEPASDGC

Q31QE7 ATP-dependent Clp protease adapter protein ClpS2.4e-1858.23Show/hide
Query:  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEP
        RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL SSIEP
Subjt:  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEP

Q3AUR5 ATP-dependent Clp protease adapter protein ClpS1.8e-1342.16Show/hide
Query:  EKPTIEKTTPGRESEFD--VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSI
        E PT    +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSI
Subjt:  EKPTIEKTTPGRESEFD--VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSI

Query:  EP
        EP
Subjt:  EP

Q5N3U1 ATP-dependent Clp protease adapter protein ClpS1.1e-1556.16Show/hide
Query:  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGL
        RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL
Subjt:  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGL

Q9SX29 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic1.5e-5577.54Show/hide
Query:  GDKYYFHK-QCRNRSTLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
        GDK+   K  C NRS LM LS  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Subjt:  GDKYYFHK-QCRNRSTLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH

Query:  YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
         NG++VVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Subjt:  YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Arabidopsis top hitse value%identityAlignment
AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein1.0e-5677.54Show/hide
Query:  GDKYYFHK-QCRNRSTLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
        GDK+   K  C NRS LM LS  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Subjt:  GDKYYFHK-QCRNRSTLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH

Query:  YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
         NG++VVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Subjt:  YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

AT1G68660.2 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein3.5e-3659.42Show/hide
Query:  GDKYYFHK-QCRNRSTLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
        GDK+   K  C NRS LM LS  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMK                  
Subjt:  GDKYYFHK-QCRNRSTLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH

Query:  YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
                     DAE HCMQLRGNGLLSS+EP   GC
Subjt:  YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCACCTTAATGATGTTATCAGTTGCTGAGCTCGGAAAAGGTGGGGGGTTGTTGGAAAAGCCAACCATAGA
GAAGACAACACCTGGTCGTGAATCTGAGTTTGACGTTAGGAAATCAAGGAAAACTGCCCCGCCGTATCGAGTGCTGCTACATAACGACAATTACAATAAGCGAGAATACG
TTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAACGGGATGTCAGTGGTAATTATCTGCGCTCAA
GTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAACGGTCTTCTAAGTTCAATCGAGCCTGCGAGTGATGGTTGT
mRNA sequenceShow/hide mRNA sequence
GGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCACCTTAATGATGTTATCAGTTGCTGAGCTCGGAAAAGGTGGGGGGTTGTTGGAAAAGCCAACCATAGA
GAAGACAACACCTGGTCGTGAATCTGAGTTTGACGTTAGGAAATCAAGGAAAACTGCCCCGCCGTATCGAGTGCTGCTACATAACGACAATTACAATAAGCGAGAATACG
TTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAACGGGATGTCAGTGGTAATTATCTGCGCTCAA
GTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAACGGTCTTCTAAGTTCAATCGAGCCTGCGAGTGATGGTTGT
Protein sequenceShow/hide protein sequence
GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQ
VDAEDHCMQLRGNGLLSSIEPASDGC