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MS004130 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004130
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear pore complex protein NUP1-like isoform X1
Genome locationscaffold92:246500..246694
RNA-Seq ExpressionMS004130
SyntenyMS004130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032030.1 Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-1160.81Show/hide
Query:  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        MATA  RK + + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

XP_022956529.1 nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata]1.7e-1160.81Show/hide
Query:  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        MATA  RK + + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

XP_022995174.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita maxima]2.7e-1263.51Show/hide
Query:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        MATAR+QK   + G    GKF D+K  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

XP_022997509.1 nuclear pore complex protein NUP1-like isoform X2 [Cucurbita maxima]2.7e-1263.51Show/hide
Query:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        MATAR+QK   + G    GKF D+K  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

XP_023528157.1 nuclear pore complex protein NUP1-like isoform X2 [Cucurbita pepo subsp. pepo]1.7e-1160.81Show/hide
Query:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        M TAR+QK   + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

TrEMBL top hitse value%identityAlignment
A0A1S3BFS9 nuclear pore complex protein NUP1 isoform X12.7e-1055.7Show/hide
Query:  MATARKQK--------VQAGFGKVGKFKDEKLLRKS-------PPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSV
        M TAR+QK         +   G VGKF DE+ ++KS       PP  I T+G+NSWILKLVDPAQR ISSGS+MLFSSV
Subjt:  MATARKQK--------VQAGFGKVGKFKDEKLLRKS-------PPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSV

A0A6J1GWT8 nuclear pore complex protein NUP1-like isoform X18.4e-1260.81Show/hide
Query:  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        MATA  RK + + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

A0A6J1GZB0 nuclear pore complex protein NUP1-like isoform X28.4e-1260.81Show/hide
Query:  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        MATA  RK + + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

A0A6J1K2T4 nuclear pore complex protein NUP1-like isoform X11.3e-1263.51Show/hide
Query:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        MATAR+QK   + G    GKF D+K  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

A0A6J1KBI9 nuclear pore complex protein NUP1-like isoform X21.3e-1263.51Show/hide
Query:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
        MATAR+QK   + G    GKF D+K  RK        PPT + TSG+NSWILKLVDPAQR ISSGSQMLFSSVF
Subjt:  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTGCGCGAAAACAGAAAGTCCAAGCAGGTTTCGGAAAGGTTGGAAAATTTAAGGATGAAAAACTCCTTAGAAAATCGCCGCCGACTGATATTGGAACGTCTGG
AAGTAATTCGTGGATCTTGAAGCTCGTTGATCCGGCGCAAAGGCCCATTTCCTCTGGTTCTCAGATGCTTTTTTCCTCCGTCTTC
mRNA sequenceShow/hide mRNA sequence
ATGGCGACTGCGCGAAAACAGAAAGTCCAAGCAGGTTTCGGAAAGGTTGGAAAATTTAAGGATGAAAAACTCCTTAGAAAATCGCCGCCGACTGATATTGGAACGTCTGG
AAGTAATTCGTGGATCTTGAAGCTCGTTGATCCGGCGCAAAGGCCCATTTCCTCTGGTTCTCAGATGCTTTTTTCCTCCGTCTTC
Protein sequenceShow/hide protein sequence
MATARKQKVQAGFGKVGKFKDEKLLRKSPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF