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MS004131 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004131
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear pore complex protein NUP1-like
Genome locationscaffold92:248086..248357
RNA-Seq ExpressionMS004131
SyntenyMS004131
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601239.1 Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. sororia]3.6e-1575.38Show/hide
Query:  QVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        +VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+ST+Q
Subjt:  QVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
KAG7032030.1 Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-1576.56Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+ST+Q
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
XP_022956526.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata]4.7e-1576.56Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+ST+Q
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
XP_022956529.1 nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata]4.7e-1576.56Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+ST+Q
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
XP_022997509.1 nuclear pore complex protein NUP1-like isoform X2 [Cucurbita maxima]1.4e-1478.12Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYM  R+PK+ PSM   RAQGLGENSA P+ TSF SKSIDMLLVP+STSQ
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
TrEMBL top hitse value%identityAlignment
A0A6J1GWT8 nuclear pore complex protein NUP1-like isoform X12.3e-1576.56Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+ST+Q
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
A0A6J1GZB0 nuclear pore complex protein NUP1-like isoform X22.3e-1576.56Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+ST+Q
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
A0A6J1K2T4 nuclear pore complex protein NUP1-like isoform X16.6e-1578.12Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYM  R+PK+ PSM   RAQGLGENSA P+ TSF SKSIDMLLVP+STSQ
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
A0A6J1KBI9 nuclear pore complex protein NUP1-like isoform X26.6e-1578.12Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYM  R+PK+ PSM   RAQGLGENSA P+ TSF SKSIDMLLVP+STSQ
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
A0A6J1KDW6 nuclear pore complex protein NUP1-like isoform X36.6e-1578.12Show/hide
Query:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
        VLDEDISSPAE+ARAYM  R+PK+ PSM   RAQGLGENSA P+ TSF SKSIDMLLVP+STSQ
Subjt:  VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQ
SwissProt top hitse value%identityAlignment
Q9CAF4 Nuclear pore complex protein NUP17.7e-1348.94Show/hide
Query:  LQVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQTP-ENGFVIPKCQSRLSMYSMAQLLYSR
        L+ LDE I+SPA++A+AYMG R  +V PSM   R Q   E+S   + T FP KS  M LV   + Q P ENGFV P+ + R ++YSMA+  YSR
Subjt:  LQVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQTP-ENGFVIPKCQSRLSMYSMAQLLYSR
Arabidopsis top hitse value%identityAlignment
AT3G10650.1 BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1)5.5e-1448.94Show/hide
Query:  LQVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQTP-ENGFVIPKCQSRLSMYSMAQLLYSR
        L+ LDE I+SPA++A+AYMG R  +V PSM   R Q   E+S   + T FP KS  M LV   + Q P ENGFV P+ + R ++YSMA+  YSR
Subjt:  LQVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQTP-ENGFVIPKCQSRLSMYSMAQLLYSR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCAGGTCCTTGATGAAGATATTTCGTCGCCTGCAGAGATGGCGAGGGCATACATGGGCAGAAGGCGGCCAAAAGTTGGTCCTTCAATGCGAGCTCAAGGACTTGGGGA
AAATTCAGCTATTCCAAGTTGTACATCGTTCCCTTCAAAATCAATAGATATGTTGCTTGTGCCAACGTCTACCAGTCAGACACCTGAGAATGGTTTTGTAATCCCCAAAT
GTCAAAGCCGACTTTCAATGTACAGCATGGCTCAGTTGCTCTATTCCAGA
mRNA sequenceShow/hide mRNA sequence
CTTCAGGTCCTTGATGAAGATATTTCGTCGCCTGCAGAGATGGCGAGGGCATACATGGGCAGAAGGCGGCCAAAAGTTGGTCCTTCAATGCGAGCTCAAGGACTTGGGGA
AAATTCAGCTATTCCAAGTTGTACATCGTTCCCTTCAAAATCAATAGATATGTTGCTTGTGCCAACGTCTACCAGTCAGACACCTGAGAATGGTTTTGTAATCCCCAAAT
GTCAAAGCCGACTTTCAATGTACAGCATGGCTCAGTTGCTCTATTCCAGA
Protein sequenceShow/hide protein sequence
LQVLDEDISSPAEMARAYMGRRRPKVGPSMRAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQTPENGFVIPKCQSRLSMYSMAQLLYSR