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MS004132 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004132
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear pore complex protein NUP1-like isoform X1
Genome locationscaffold92:249494..249964
RNA-Seq ExpressionMS004132
SyntenyMS004132
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601239.1 Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3766.24Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS AV Q TANEA AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPE K+ D  VFS+GNNVSPRKQPNA ST  DVGNK AS TE  AA ENGN AP+
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
KAG7032030.1 Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-3765.61Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS A+ Q TANEA AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPE K+ D  VFS+GNNVSPRKQPNA ST  DVGNK AS TE  AA ENGN AP+
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
XP_022956526.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata]4.4e-3765.61Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS AV Q TANE  AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPE K+ D  VFS+GNNVSPRKQPNA ST  DVGNK AS TE  AA ENGN AP+
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
XP_022956529.1 nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata]4.4e-3765.61Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS AV Q TANE  AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPE K+ D  VFS+GNNVSPRKQPNA ST  DVGNK AS TE  AA ENGN AP+
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
XP_023528164.1 nuclear pore complex protein NUP1-like isoform X3 [Cucurbita pepo subsp. pepo]5.8e-3764.97Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +R+APA AE RE GDIS AV Q TANEA  P++ QT SEVIV SPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPE K+ D  VFS+GNNVSPRKQPNA ST  DVGNK AS TE  AASENGN AP+
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
TrEMBL top hitse value%identityAlignment
A0A6J1GWT8 nuclear pore complex protein NUP1-like isoform X12.1e-3765.61Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS AV Q TANE  AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPE K+ D  VFS+GNNVSPRKQPNA ST  DVGNK AS TE  AA ENGN AP+
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
A0A6J1GZB0 nuclear pore complex protein NUP1-like isoform X22.1e-3765.61Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS AV Q TANE  AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPE K+ D  VFS+GNNVSPRKQPNA ST  DVGNK AS TE  AA ENGN AP+
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
A0A6J1K2T4 nuclear pore complex protein NUP1-like isoform X11.1e-3664.97Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS AV Q TA+E+ AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPENK+ D  VFS+GNNVSPRKQPNA ST  D GNK AS TE  AASENGN A +
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
A0A6J1KBI9 nuclear pore complex protein NUP1-like isoform X21.1e-3664.97Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS AV Q TA+E+ AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPENK+ D  VFS+GNNVSPRKQPNA ST  D GNK AS TE  AASENGN A +
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
A0A6J1KDW6 nuclear pore complex protein NUP1-like isoform X31.1e-3664.97Show/hide
Query:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED
        DE S +RVAPA AE RE GDIS AV Q TA+E+ AP++ QT SEVIVGSPLNRSS+LKTS+ + +D  D+SFTFQ A      SQ ETI DSAPT+S  +
Subjt:  DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVED

Query:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
         DLPENK+ D  VFS+GNNVSPRKQPNA ST  D GNK AS TE  AASENGN A +
Subjt:  KDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATGAAATTTCTGCTGAAAGAGTTGCACCTGCTATGGCTGAGTTTAGAGAAGACGGTGATATTTCTTCAGCTGTGACACAGAAAACTGCAAATGAAGCCTTTGCACCTGC
AAGACAACAAACTACATCTGAAGTGATAGTGGGTTCTCCCCTCAACAGAAGTTCTAATTTGAAAACTTCGGACGACACCACCTATGATGCAAAGGATTCCAGCTTTACTT
TTCAAAATGCATCTTCACTTTGCACGACATCACAAGAGGAAACTATTGATGATTCTGCTCCCACCCATTCTGTTGAAGATAAGGATCTTCCAGAAAACAAGCAAAGTGAT
CCTTCAGTTTTTAGCTATGGAAATAATGTTTCTCCACGAAAGCAACCAAATGCTTGTTCTACCTTACTTGATGTTGGAAATAAGGTTGCTTCTCTGACAGAATCACGTGC
TGCTTCTGAAAATGGTAATAAGGCTCCATAC
mRNA sequenceShow/hide mRNA sequence
GATGAAATTTCTGCTGAAAGAGTTGCACCTGCTATGGCTGAGTTTAGAGAAGACGGTGATATTTCTTCAGCTGTGACACAGAAAACTGCAAATGAAGCCTTTGCACCTGC
AAGACAACAAACTACATCTGAAGTGATAGTGGGTTCTCCCCTCAACAGAAGTTCTAATTTGAAAACTTCGGACGACACCACCTATGATGCAAAGGATTCCAGCTTTACTT
TTCAAAATGCATCTTCACTTTGCACGACATCACAAGAGGAAACTATTGATGATTCTGCTCCCACCCATTCTGTTGAAGATAAGGATCTTCCAGAAAACAAGCAAAGTGAT
CCTTCAGTTTTTAGCTATGGAAATAATGTTTCTCCACGAAAGCAACCAAATGCTTGTTCTACCTTACTTGATGTTGGAAATAAGGTTGCTTCTCTGACAGAATCACGTGC
TGCTTCTGAAAATGGTAATAAGGCTCCATAC
Protein sequenceShow/hide protein sequence
DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSD
PSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY