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MS004149 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004149
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationscaffold92:342373..342672
RNA-Seq ExpressionMS004149
SyntenyMS004149
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2368.93Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL
        ESNYHQK+  EK+GKD  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG+AVIPVYAAGSA+A  RQGR  NAGN  ENNMGLLVA+VL
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL

Query:  AAI
        AAI
Subjt:  AAI

XP_008446752.1 PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo]7.2e-2568.87Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVA
        ESNY QK+Y  K GK   TNQI  RYS S  TVS+ +     G  +A GG+NGGGSRPH+GGG+AVIPVYAAGSA+AR RQGRPHNAGN  ENN GLLVA
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVA

Query:  AVLAAI
        AVLAAI
Subjt:  AVLAAI

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]2.3e-2368.93Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL
        ESNYHQK+  EK+GKD  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG+AVIPVYAAGSA+A  RQGR  NAGN  ENNMGLLVA+VL
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL

Query:  AAI
        AAI
Subjt:  AAI

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]2.3e-2368.93Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL
        ESNYHQK+  EK+GKD  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG+AVIPVYAAGSA+A  RQGR  NAGN  ENNMGLLVA+VL
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL

Query:  AAI
        AAI
Subjt:  AAI

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]5.3e-2873.79Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGS--AAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL
        ESNY QK+Y EK  KD  TNQI  RYS +  TVS+G+G+GS  A GG+NGGGSRPH+GGG+AVIPVYAAGSA+A  RQGRPHNAGNR ENN GLLVAAVL
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGS--AAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL

Query:  AAI
        AAI
Subjt:  AAI

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein1.2e-2263.72Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGS------------AAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCEN
        ESNY QK+Y +K+GK   TNQI  RYS S  TVS+ + RGS            AAGG   GGSRP +GGG+AVIPVYAAGSA+A  RQGR HNAGN  EN
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGS------------AAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCEN

Query:  NMGLLVAAVLAAI
        NMGLLVAAVLAAI
Subjt:  NMGLLVAAVLAAI

A0A1S3BFU8 uncharacterized protein LOC1034893823.5e-2568.87Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVA
        ESNY QK+Y  K GK   TNQI  RYS S  TVS+ +     G  +A GG+NGGGSRPH+GGG+AVIPVYAAGSA+AR RQGRPHNAGN  ENN GLLVA
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVA

Query:  AVLAAI
        AVLAAI
Subjt:  AVLAAI

A0A5A7SUI0 Uncharacterized protein3.5e-2568.87Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVA
        ESNY QK+Y  K GK   TNQI  RYS S  TVS+ +     G  +A GG+NGGGSRPH+GGG+AVIPVYAAGSA+AR RQGRPHNAGN  ENN GLLVA
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGV-----GRGSAAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVA

Query:  AVLAAI
        AVLAAI
Subjt:  AVLAAI

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like1.1e-2368.93Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL
        ESNYHQK+  EK+GKD  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG+AVIPVYAAGSA+A  RQGR  NAGN  ENNMGLLVA+VL
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL

Query:  AAI
        AAI
Subjt:  AAI

A0A6J1JB47 uncharacterized protein LOC1114851591.5e-2367.96Show/hide
Query:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL
        E NYHQK+  EK+G+D  TN+I + YS    TVS G+G GSAA GG+NGGG RP + GGG+AVIPVYAAGSA+A  RQGRP NAGN  ENNMGLLVA+VL
Subjt:  ESNYHQKSYKEKYGKDWATNQIGTRYSLS--TVSHGVGRGSAA-GGDNGGGSRPHS-GGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVL

Query:  AAI
        AAI
Subjt:  AAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAGAGTCTAATTACCATCAGAAAAGTTACAAAGAAAAATATGGCAAGGATTGGGCTACTAACCAGATTGGCACGAGATACAGTTTAAGCACCGTATCTCATGGTGTTGG
TCGTGGAAGCGCAGCCGGCGGAGATAATGGCGGTGGCAGTAGACCTCATTCAGGAGGAGGTTCCGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCTGAAGCACGTCGCC
GCCAGGGTCGGCCGCACAATGCAGGAAATCGCTGTGAGAACAACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATT
mRNA sequenceShow/hide mRNA sequence
GCAGAGTCTAATTACCATCAGAAAAGTTACAAAGAAAAATATGGCAAGGATTGGGCTACTAACCAGATTGGCACGAGATACAGTTTAAGCACCGTATCTCATGGTGTTGG
TCGTGGAAGCGCAGCCGGCGGAGATAATGGCGGTGGCAGTAGACCTCATTCAGGAGGAGGTTCCGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCTGAAGCACGTCGCC
GCCAGGGTCGGCCGCACAATGCAGGAAATCGCTGTGAGAACAACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATT
Protein sequenceShow/hide protein sequence
AESNYHQKSYKEKYGKDWATNQIGTRYSLSTVSHGVGRGSAAGGDNGGGSRPHSGGGSAVIPVYAAGSAEARRRQGRPHNAGNRCENNMGLLVAAVLAAI