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MS004152 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004152
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationscaffold92:356973..357496
RNA-Seq ExpressionMS004152
SyntenyMS004152
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]9.6e-4485.85Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVF N ELL +H GRKIRAVVQV +SDGGVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIIN EH TDFGNTFDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+FL
Subjt:  FKSIFL

XP_022150618.1 replication protein A 14 kDa subunit B-like [Momordica charantia]4.0e-5098.11Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVNAELLKLHIGRKIRAV QVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIIN EHSTDFGNTFDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        FKSIFL
Subjt:  FKSIFL

XP_022988152.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]1.5e-4183.02Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVF N ELL +H GRKIRAVVQV +SD GVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIIN EH TDFG  FDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+FL
Subjt:  FKSIFL

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]1.1e-4283.96Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVF N ELL +H GRKIRAVVQV +SDGGVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIIN EH TDFG TFDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]3.1e-4281.13Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAVVQV +SDGG+VTGKSTDEQ+LT+ GLP VPLMNFVEV+GIAE+NKIIN EH TDFG TFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein5.3e-4078.3Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAVVQV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIAESNK I  E  TDFG TFD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

A0A1S3BGM8 replication protein A 14 kDa subunit B-like9.7e-4279.25Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAVVQV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIA+SNK IN EH TDFG TFD +SYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

A0A5A7SU42 Replication protein A 14 kDa subunit B-like9.7e-4279.25Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAVVQV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIA+SNK IN EH TDFG TFD +SYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

A0A6J1D9X1 replication protein A 14 kDa subunit B-like1.9e-5098.11Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVNAELLKLHIGRKIRAV QVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIIN EHSTDFGNTFDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        FKSIFL
Subjt:  FKSIFL

A0A6J1JC99 replication protein A 14 kDa subunit B-like7.4e-4283.02Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVF N ELL +H GRKIRAVVQV +SD GVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIIN EH TDFG  FDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+FL
Subjt:  FKSIFL

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B2.4e-2956.6Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTS+PA FVN  LL+ +IG+K+RAV+QV +SD G V GKSTD+Q++ V G P+ PL  ++EVIGIAE++  I  E  T+FG++FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+ +F+
Subjt:  FKSIFL

Q9LXK1 Replication protein A 14 kDa subunit A1.7e-2757.01Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANG
        MDTS+P+ FVN  LL+  IG+K+R V+QVT S+ G V GKSTD+ ++ V G  P  PL  ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANG
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANG

Query:  EFKSIFL
        EFK +F+
Subjt:  EFKSIFL

Q9SDK9 Replication protein A 14 kDa subunit1.4e-2650.94Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTS PA FVN E+LK+ +GR++R VVQ  + +GG++ G+STD  +LT+ G    P+ ++VE+IGIAE N+ I  E  TDFG  FD   +N LC+LANG+
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
         K +FL
Subjt:  FKSIFL

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein1.2e-2857.01Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANG
        MDTS+P+ FVN  LL+  IG+K+R V+QVT S+ G V GKSTD+ ++ V G  P  PL  ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANG
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANG

Query:  EFKSIFL
        EFK +F+
Subjt:  EFKSIFL

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein1.2e-2857.01Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANG
        MDTS+P+ FVN  LL+  IG+K+R V+QVT S+ G V GKSTD+ ++ V G  P  PL  ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANG
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANG

Query:  EFKSIFL
        EFK +F+
Subjt:  EFKSIFL

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.7e-3056.6Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE
        MDTS+PA FVN  LL+ +IG+K+RAV+QV +SD G V GKSTD+Q++ V G P+ PL  ++EVIGIAE++  I  E  T+FG++FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+ +F+
Subjt:  FKSIFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACCTCAAACCCTGCAGTTTTTGTCAACGCTGAATTATTGAAATTGCACATCGGAAGAAAGATTCGAGCAGTTGTTCAAGTTACCAAAAGTGATGGTGGAGTTGT
CACAGGAAAATCTACGGATGAACAAGAGTTGACTGTACATGGCTTGCCCAAAGTCCCTCTCATGAATTTTGTCGAGGTGATTGGTATCGCTGAGAGCAACAAGATCATCA
ATTTTGAACATTCGACGGACTTTGGAAACACATTTGATGCACAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAAAAGTATATTTCTG
mRNA sequenceShow/hide mRNA sequence
ATGGATACCTCAAACCCTGCAGTTTTTGTCAACGCTGAATTATTGAAATTGCACATCGGAAGAAAGATTCGAGCAGTTGTTCAAGTTACCAAAAGTGATGGTGGAGTTGT
CACAGGAAAATCTACGGATGAACAAGAGTTGACTGTACATGGCTTGCCCAAAGTCCCTCTCATGAATTTTGTCGAGGTGATTGGTATCGCTGAGAGCAACAAGATCATCA
ATTTTGAACATTCGACGGACTTTGGAAACACATTTGATGCACAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAAAAGTATATTTCTG
Protein sequenceShow/hide protein sequence
MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL