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MS004161 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004161
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S acidic ribosomal protein P2-like
Genome locationscaffold92:427043..428188
RNA-Seq ExpressionMS004161
SyntenyMS004161
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034662.1 60S acidic ribosomal protein P2-4-like [Cucumis melo var. makuwa]2.9e-3884.35Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK+VAAYLLAVLGGN SPSA D+KDILGSVGAEIDE+RIELLLSNVKGKD+ ELIASGREKLASVPSGGG  VAV+A GGGGGGAAAPA  E+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDDVSFINVYE
        EKEESDDVSF+   E
Subjt:  EKEESDDVSFINVYE

XP_022150520.1 60S acidic ribosomal protein P2-1-like [Momordica charantia]3.6e-4499.07Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGG+VAVSAGGGGGGGAAAPAAEESKKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

XP_022945075.1 60S acidic ribosomal protein P2-2-like [Cucurbita moschata]1.2e-3684.11Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK+VAAYLLAVLGGN SPSA D+K+ILGSVGAE+D+++IELLLS+VKGKD+ ELIASGREKLASVPSGGG  +AV+AGGGGGGG AAPAAEESKKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

XP_023541212.1 60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]5.5e-3785.05Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK+VAAYLLAVLGGN SPSA D+K+ILGSVGAE+D++RIELLLS+VKGKD+ ELIASGREKLASVPSGGG  +AV+AGGGGGGG AAPAAEESKKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

XP_038891319.1 60S acidic ribosomal protein P2-2-like [Benincasa hispida]5.5e-3787.85Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK+VAAYLLAVLGGN SPSA D+KDILGSVGAEIDE+RIELLLSNVKGKD+ ELIASGREKLASVPSGGG VVA +A GGGGGGA APAA ESKKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

TrEMBL top hitse value%identityAlignment
A0A1S3BFW0 60S acidic ribosomal protein P2-4-like2.3e-3686.92Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK+VAAYLLAVLGGN SPSA D+KDILGSVGAEIDE+RIELLLSNVKGKD+ ELIASGREKLASVPSGGG  VAV+A GGGGGGAAAPA  E+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

A0A5D3CBJ1 60S acidic ribosomal protein P2-4-like1.4e-3884.35Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK+VAAYLLAVLGGN SPSA D+KDILGSVGAEIDE+RIELLLSNVKGKD+ ELIASGREKLASVPSGGG  VAV+A GGGGGGAAAPA  E+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDDVSFINVYE
        EKEESDDVSF+   E
Subjt:  EKEESDDVSFINVYE

A0A6J1D8P9 60S acidic ribosomal protein P2-1-like1.7e-4499.07Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGG+VAVSAGGGGGGGAAAPAAEESKKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

A0A6J1FZV9 60S acidic ribosomal protein P2-2-like6.0e-3784.11Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK+VAAYLLAVLGGN SPSA D+K+ILGSVGAE+D+++IELLLS+VKGKD+ ELIASGREKLASVPSGGG  +AV+AGGGGGGG AAPAAEESKKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

A0A6J1HYE9 60S acidic ribosomal protein P2-2-like1.7e-3683.18Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK+VAAYLLAVLGGN SPSA D+K+ILGSVGAE+D+++IELLLS+VKGKD+ ELIASGREKLASVPSGGG  +AV+AGGGGGGG A PAAEESKKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

SwissProt top hitse value%identityAlignment
P41099 60S acidic ribosomal protein P21.1e-2769.81Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MKV+AA+LLA+LGGN SP+  D+K IL SVGA+ D+D+IELLLS VKGKDI ELIASGRE+LASVPSGGG  VA +AGGGGG   AA AAEE KKEEK E
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESD
        E+ + +
Subjt:  EKEESD

P46252 60S acidic ribosomal protein P2A3.5e-2669.16Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MK VAAYLLAVL GN SPSA D+  IL SVG E+D +++ELLLS + GKDI ELIA+GREK ASVP GGGGV   +A    GG  AAPAA E+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDD
        EKEESDD
Subjt:  EKEESDD

P51407 60S acidic ribosomal protein P2-13.3e-3273.28Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAV-SAGGGGGGGAAAPAAEESKKEEKV
        MKVVAA+LLAVL G  SP+ GD+KDILGSVGAE ++ +IELLL  VKGKD+AELIA+GREKLASVPSGGGG VAV SA  GGGGG  APAA ESKKEEK 
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAV-SAGGGGGGGAAAPAAEESKKEEKV

Query:  EEKEESDDVSFINVYE
        EEKEESDD    +++E
Subjt:  EEKEESDDVSFINVYE

Q9LXM8 60S acidic ribosomal protein P2-42.2e-2868.97Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAG-GGGGGGAAAPAAEESKKEEKV
        MKV AA+LLAVLGGN +PSA ++KDI+G+VGA++D + IELLL  V GKDIAELIASGREKLASVPSGGG  VAVSA    GGGGAAAPA    KKE K 
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAG-GGGGGGAAAPAAEESKKEEKV

Query:  EEKEESDDVSFINVYE
        EEKEESDD    +++E
Subjt:  EEKEESDDVSFINVYE

Q9SLF7 60S acidic ribosomal protein P2-28.0e-3167.83Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MKVVAAYLLAVL G  SP++ D+K ILGSVGAE ++ +IELLL  VKGKD+AELIA+GREKLASVPSGGGG VAV++   GGGG    +A ESKKEEK E
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDDVSFINVYE
        EKEESDD    +++E
Subjt:  EKEESDDVSFINVYE

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family5.7e-3267.83Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MKVVAAYLLAVL G  SP++ D+K ILGSVGAE ++ +IELLL  VKGKD+AELIA+GREKLASVPSGGGG VAV++   GGGG    +A ESKKEEK E
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDDVSFINVYE
        EKEESDD    +++E
Subjt:  EKEESDDVSFINVYE

AT2G27710.2 60S acidic ribosomal protein family5.7e-3267.83Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MKVVAAYLLAVL G  SP++ D+K ILGSVGAE ++ +IELLL  VKGKD+AELIA+GREKLASVPSGGGG VAV++   GGGG    +A ESKKEEK E
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDDVSFINVYE
        EKEESDD    +++E
Subjt:  EKEESDDVSFINVYE

AT2G27710.3 60S acidic ribosomal protein family5.7e-3267.83Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE
        MKVVAAYLLAVL G  SP++ D+K ILGSVGAE ++ +IELLL  VKGKD+AELIA+GREKLASVPSGGGG VAV++   GGGG    +A ESKKEEK E
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVE

Query:  EKEESDDVSFINVYE
        EKEESDD    +++E
Subjt:  EKEESDDVSFINVYE

AT2G27720.1 60S acidic ribosomal protein family2.3e-3373.28Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAV-SAGGGGGGGAAAPAAEESKKEEKV
        MKVVAA+LLAVL G  SP+ GD+KDILGSVGAE ++ +IELLL  VKGKD+AELIA+GREKLASVPSGGGG VAV SA  GGGGG  APAA ESKKEEK 
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAV-SAGGGGGGGAAAPAAEESKKEEKV

Query:  EEKEESDDVSFINVYE
        EEKEESDD    +++E
Subjt:  EEKEESDDVSFINVYE

AT2G27720.3 60S acidic ribosomal protein family1.1e-3066.41Show/hide
Query:  MKVVAAYLLAVLGGNPSPSAGDVKDILGS------------VGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAV-SAGGGGGGGAAA
        MKVVAA+LLAVL G  SP+ GD+KDILGS            VGAE ++ +IELLL  VKGKD+AELIA+GREKLASVPSGGGG VAV SA  GGGGG  A
Subjt:  MKVVAAYLLAVLGGNPSPSAGDVKDILGS------------VGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAV-SAGGGGGGGAAA

Query:  PAAEESKKEEKVEEKEESDDVSFINVYE
        PAA ESKKEEK EEKEESDD    +++E
Subjt:  PAAEESKKEEKVEEKEESDDVSFINVYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTCGTAGCTGCATATTTGCTGGCCGTTTTGGGAGGCAACCCCAGCCCTTCCGCCGGAGATGTGAAGGATATTCTTGGATCTGTTGGAGCTGAAATTGATGAGGA
CAGAATTGAGCTTCTCTTGTCTAATGTGAAGGGTAAGGATATTGCAGAGCTCATTGCATCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGTGGTGGCGTTGTGG
CGGTGTCTGCTGGAGGAGGCGGAGGTGGTGGTGCGGCTGCTCCTGCTGCAGAAGAGTCAAAGAAAGAGGAGAAGGTCGAAGAGAAGGAGGAATCAGACGATGTAAGTTTC
ATAAATGTTTATGAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTCGTAGCTGCATATTTGCTGGCCGTTTTGGGAGGCAACCCCAGCCCTTCCGCCGGAGATGTGAAGGATATTCTTGGATCTGTTGGAGCTGAAATTGATGAGGA
CAGAATTGAGCTTCTCTTGTCTAATGTGAAGGGTAAGGATATTGCAGAGCTCATTGCATCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGTGGTGGCGTTGTGG
CGGTGTCTGCTGGAGGAGGCGGAGGTGGTGGTGCGGCTGCTCCTGCTGCAGAAGAGTCAAAGAAAGAGGAGAAGGTCGAAGAGAAGGAGGAATCAGACGATGTAAGTTTC
ATAAATGTTTATGAA
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNPSPSAGDVKDILGSVGAEIDEDRIELLLSNVKGKDIAELIASGREKLASVPSGGGGVVAVSAGGGGGGGAAAPAAEESKKEEKVEEKEESDDVSF
INVYE