; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004189 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004189
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein BTR1
Genome locationscaffold92:684478..689624
RNA-Seq ExpressionMS004189
SyntenyMS004189
Gene Ontology termsGO:0010468 - regulation of gene expression (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR004087 - K Homology domain
IPR004088 - K Homology domain, type 1
IPR036612 - K Homology domain, type 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034684.1 protein BTR1 [Cucumis melo var. makuwa]1.3e-14897.54Show/hide
Query:  DNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVP
        DNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVP
Subjt:  DNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVP

Query:  HSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQN
        HSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYN MNYGSNGG GGRFQN
Subjt:  HSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQN

Query:  NKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        NKEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR AESMI+QKVAYASERV+
Subjt:  NKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

XP_008446807.1 PREDICTED: protein BTR1 [Cucumis melo]4.6e-14997.55Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
        PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYN MNYGSNGG GGRFQ
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ

Query:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        NNKEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR AESMI+QKVAYASERV+
Subjt:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

XP_011655857.1 protein BTR1 isoform X2 [Cucumis sativus]9.6e-14796.52Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        SDNM+KATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSN-GGAGGRF
        PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTS+N MNYGSN GG GGRF
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSN-GGAGGRF

Query:  QNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        QNNKEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR AESMI+QKVAYASERV+
Subjt:  QNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

XP_022139256.1 protein BTR1 [Momordica charantia]4.5e-15299.65Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
        PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ

Query:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERV+
Subjt:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

XP_038893255.1 protein BTR1 [Benincasa hispida]2.7e-14997.55Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        SDNM+KATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
        PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYN MNYGSNGG GGRFQ
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ

Query:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        NNKEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR AESMI+QKVAYASERV+
Subjt:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

TrEMBL top hitse value%identityAlignment
A0A0A0KWP6 Uncharacterized protein4.7e-14796.52Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        SDNM+KATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSN-GGAGGRF
        PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTS+N MNYGSN GG GGRF
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSN-GGAGGRF

Query:  QNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        QNNKEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR AESMI+QKVAYASERV+
Subjt:  QNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

A0A1S3BFZ8 protein BTR12.2e-14997.55Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
        PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYN MNYGSNGG GGRFQ
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ

Query:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        NNKEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR AESMI+QKVAYASERV+
Subjt:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

A0A5A7STZ7 Protein BTR16.5e-14997.54Show/hide
Query:  DNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVP
        DNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVP
Subjt:  DNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVP

Query:  HSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQN
        HSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYN MNYGSNGG GGRFQN
Subjt:  HSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQN

Query:  NKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        NKEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR AESMI+QKVAYASERV+
Subjt:  NKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

A0A6J1CC53 protein BTR12.2e-15299.65Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
        PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ

Query:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM
        NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERV+
Subjt:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVM

A0A6J1HU77 protein BTR1-like7.4e-14591.69Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        SDNM+K TYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAM+LVLAKLLSELHAEEGDDVEPRTKVRLIV
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
        PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYN +NY SNGGAGGRF 
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ

Query:  NNK---------------EERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERV
        NNK               EERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR+AESMIMQKVAYASERV
Subjt:  NNK---------------EERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERV

Query:  M
        +
Subjt:  M

SwissProt top hitse value%identityAlignment
P51513 RNA-binding protein Nova-11.0e-2623.56Show/hide
Query:  DKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----
        D   +++ L+ + AAGS+IGKGG TI   Q ++GA I+LS++ +F+PGTT+R+ ++ G++ E L A+   +A+ + E+       E    ++P+T     
Subjt:  DKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----

Query:  ---------------------------KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSED
                                   +V++IVP+S+ G IIGKGG+T+K+ +E S A +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ ED
Subjt:  ---------------------------KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSED

Query:  PH--------------------------------------------------------------------YTQSMNYPFSYPTSYNTMNYG---------
        P                                                                      T ++N   SY  + NT+  G         
Subjt:  PH--------------------------------------------------------------------YTQSMNYPFSYPTSYNTMNYG---------

Query:  ------------------------------SNGGAGGRF------------------------------QNNKEERSNSLTIGVSDGHIGLVVGRGGRNI
                                      + GG  G F                              + + +   + + I V +  +G ++G+GG+ +
Subjt:  ------------------------------SNGGAGGRF------------------------------QNNKEERSNSLTIGVSDGHIGLVVGRGGRNI

Query:  LEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAY
        +E  + +GARI+IS +G+F+ GT +RKVTITG+  A + A+ +I Q++ Y
Subjt:  LEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAY

Q2PFW9 RNA-binding protein Nova-11.3e-2924.88Show/hide
Query:  DKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----
        D   +++ L+ + AAGS+IGKGG TI   Q ++GA I+LS++ +F+PGTT+R+ ++ G++ E L A+   +A+ + E+       E    ++P+T     
Subjt:  DKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----

Query:  ---KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH----------------------
           +V++IVP+S+ G IIGKGG+T+K+ +E S A +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ EDP                       
Subjt:  ---KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH----------------------

Query:  ----------------------------------------------YTQSMNYPFSYPTSYNTMNYG---------------------------------
                                                       T ++N   SY  + NT+  G                                 
Subjt:  ----------------------------------------------YTQSMNYPFSYPTSYNTMNYG---------------------------------

Query:  ------SNGGAGGRF------------------------------QNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTT
              + GG  G F                              + + +   + + I V +  +G ++G+GG+ ++E  + +GARI+IS +G+F+ GT 
Subjt:  ------SNGGAGGRF------------------------------QNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTT

Query:  DRKVTITGSQRAIRTAESMIMQKVAY
        +RKVTITG+  A + A+ +I Q++ Y
Subjt:  DRKVTITGSQRAIRTAESMIMQKVAY

Q80WA4 RNA-binding protein Nova-1 (Fragment)1.0e-2925.12Show/hide
Query:  DKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----
        D   +++ L+ + AAGS+IGKGG TI   Q ++GA I+LS++ +F+PGTT+R+ ++ G+I E L A+   +A+ + E+       E    ++P+T     
Subjt:  DKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----

Query:  ---KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH----------------------
           +V++IVP+S+ G IIGKGG+T+K+ +E S A +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ EDP                       
Subjt:  ---KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPH----------------------

Query:  ----------------------------------------------YTQSMNYPFSYPTSYNTMNYG---------------------------------
                                                       T ++N   SY  + NT+  G                                 
Subjt:  ----------------------------------------------YTQSMNYPFSYPTSYNTMNYG---------------------------------

Query:  ------SNGGAGGRF------------------------------QNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTT
              + GG  G F                              + + +   + + I V +  +G ++G+GG+ ++E  + +GARI+IS +G+F+ GT 
Subjt:  ------SNGGAGGRF------------------------------QNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTT

Query:  DRKVTITGSQRAIRTAESMIMQKVAY
        +RKVTITG+  A + A+ +I Q++ Y
Subjt:  DRKVTITGSQRAIRTAESMIMQKVAY

Q9JKN6 RNA-binding protein Nova-16.1e-2723.78Show/hide
Query:  DKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----
        D   +++ L+ + AAGS+IGKGG TI   Q ++GA I+LS++ +F+PGTT+R+ ++ G+I E L A+   +A+ + E+       E    ++P+T     
Subjt:  DKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----

Query:  ---------------------------KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSED
                                   +V++IVP+S+ G IIGKGG+T+K+ +E S A +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ ED
Subjt:  ---------------------------KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSED

Query:  PH--------------------------------------------------------------------YTQSMNYPFSYPTSYNTMNYG---------
        P                                                                      T ++N   SY  + NT+  G         
Subjt:  PH--------------------------------------------------------------------YTQSMNYPFSYPTSYNTMNYG---------

Query:  ------------------------------SNGGAGGRF------------------------------QNNKEERSNSLTIGVSDGHIGLVVGRGGRNI
                                      + GG  G F                              + + +   + + I V +  +G ++G+GG+ +
Subjt:  ------------------------------SNGGAGGRF------------------------------QNNKEERSNSLTIGVSDGHIGLVVGRGGRNI

Query:  LEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAY
        +E  + +GARI+IS +G+F+ GT +RKVTITG+  A + A+ +I Q++ Y
Subjt:  LEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAY

Q9LZ82 Protein BTR13.4e-11070.77Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        +D+ +K T+IRFLVSNAAAGSVIGKGGSTI +FQ++SGARIQLSRN EFFPGTTDRIIM+SGSI E++  +EL+L KL SELHAE+G++VEPR ++RL+V
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
        P+SSCG IIGKGG+TIKSFIE+S+AGIKISP DN + G +DRLVTLSGT EEQMRA DLI++KL+ED HY+Q+++ P+SY   YN++NY  N G+GG++Q
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ

Query:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASER
        N+KEE S ++TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSGTTDRKV+ITG QRAI+ AE+MI QKV  A+ER
Subjt:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASER

Arabidopsis top hitse value%identityAlignment
AT1G33680.1 KH domain-containing protein1.3e-1331.44Show/hide
Query:  KATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR---TKVRLIVPH
        ++T  R  V ++  G++IGKGG  +   Q  SGA+IQ+ R+ E  P +  R + + G+++ I KA +L+ A +++E+ A     +  R    ++ + VP 
Subjt:  KATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR---TKVRLIVPH

Query:  SSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAG
           G IIG+GG TIK+    S+A I++ PQ N    S +R V +SG   +   AT LI   + +D         P  Y   +N   Y   G  G
Subjt:  SSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAG

AT4G10070.1 KH domain-containing protein2.3e-1329.21Show/hide
Query:  KATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR-----------T
        ++T  R  V ++  G +IGKGG TI   Q  SGA+IQ+ R+ E  P +  R + + GS+   +++ E +++ +++E  A     +  R            
Subjt:  KATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR-----------T

Query:  KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGG
        ++ + VP+   G IIG+GG TIK+    S A  ++ PQ     G  +R V +SG   +   ATD+I   ++++         P SY   YN   Y   G 
Subjt:  KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGG

Query:  AG
         G
Subjt:  AG

AT5G04430.1 binding to TOMV RNA 1L (long form)2.4e-11170.77Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        +D+ +K T+IRFLVSNAAAGSVIGKGGSTI +FQ++SGARIQLSRN EFFPGTTDRIIM+SGSI E++  +EL+L KL SELHAE+G++VEPR ++RL+V
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ
        P+SSCG IIGKGG+TIKSFIE+S+AGIKISP DN + G +DRLVTLSGT EEQMRA DLI++KL+ED HY+Q+++ P+SY   YN++NY  N G+GG++Q
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQ

Query:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASER
        N+KEE S ++TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSGTTDRKV+ITG QRAI+ AE+MI QKV  A+ER
Subjt:  NNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASER

AT5G04430.2 binding to TOMV RNA 1L (long form)1.2e-10765.9Show/hide
Query:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV
        +D+ +K T+IRFLVSNAAAGSVIGKGGSTI +FQ++SGARIQLSRN EFFPGTTDRIIM+SGSI E++  +EL+L KL SELHAE+G++VEPR ++RL+V
Subjt:  SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIV

Query:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSY--------------------
        P+SSCG IIGKGG+TIKSFIE+S+AGIKISP DN + G +DRLVTLSGT EEQMRA DLI++KL+ED HY+Q+++ P+SY                    
Subjt:  PHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSY--------------------

Query:  -PTSYNTMNYGSNGGAGGRFQNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVA
            YN++NY  N G+GG++QN+KEE S ++TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSGTTDRKV+ITG QRAI+ AE+MI QKV 
Subjt:  -PTSYNTMNYGSNGGAGGRFQNNKEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVA

Query:  YASER
         A+ER
Subjt:  YASER

AT5G46190.1 RNA-binding KH domain-containing protein3.0e-1325.69Show/hide
Query:  DNMDKATYI-RFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINE------------------------ILKAMELVLA
        DN D    + R L  +   GSVIGK G  IN  + ++ ARI++    + FPG ++R+I +  S++E                        +LK  + ++A
Subjt:  DNMDKATYI-RFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINE------------------------ILKAMELVLA

Query:  KLLSELHAEEGDDVEPRTKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGST-----DRLVTLSGTIEEQMRATDLI------VSKLS
         L +     + D  + R + RL+VP S C  +IGK GS IK+    ++A +K+  +D +    T     D +V +SG  E   +A   +      VS   
Subjt:  KLLSELHAEEGDDVEPRTKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGST-----DRLVTLSGTIEEQMRATDLI------VSKLS

Query:  EDPHYTQSMNYPFS---------------YPTSYNTMNYGSN---------GGAGGRFQN----------------NKEERSNSLTIGV--SDGHIGLVV
        + P  T     P S               YP+  +   +G+N          G G    N                    RS  L I V  S   IG V+
Subjt:  EDPHYTQSMNYPFS---------------YPTSYNTMNYGSN---------GGAGGRFQN----------------NKEERSNSLTIGV--SDGHIGLVV

Query:  GRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERV
        G+GG  I  I QASG+ I+++D     +   D  +T+T ++ +    +SM ++ V    E++
Subjt:  GRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAGACAATATGGACAAGGCCACATACATTAGGTTTCTTGTATCAAATGCTGCTGCTGGTTCTGTGATTGGGAAAGGTGGCTCAACAATTAATGATTTCCAGTCACAGTC
TGGTGCACGAATCCAATTGTCAAGGAATCATGAATTCTTTCCTGGAACCACTGATAGGATCATTATGGTATCTGGATCAATAAATGAAATATTGAAGGCCATGGAACTTG
TTCTTGCTAAGTTGTTGAGTGAGCTTCATGCTGAAGAAGGAGATGATGTTGAACCGAGAACAAAAGTGAGACTGATTGTACCCCATAGTTCTTGTGGAGCTATAATTGGG
AAAGGAGGGTCCACTATAAAGTCATTCATTGAGGACTCTCAAGCTGGCATTAAGATATCCCCCCAGGATAATAACTATATGGGATCCACTGATAGGCTGGTGACACTGTC
TGGAACTATAGAGGAACAGATGCGAGCTACTGACTTGATTGTCTCGAAGCTATCTGAAGATCCACATTACACCCAGTCAATGAATTATCCATTTTCGTACCCGACATCAT
ACAATACTATGAACTACGGATCCAATGGGGGAGCTGGAGGGAGGTTCCAGAACAATAAGGAGGAACGGAGTAACTCCTTGACTATTGGCGTTTCGGATGGCCACATCGGG
TTGGTTGTTGGTCGTGGTGGAAGAAACATACTGGAAATTAGTCAGGCTAGTGGAGCCAGAATTAAGATATCAGATAGAGGAGATTTCATGTCCGGAACCACTGACAGGAA
AGTAACAATTACGGGGTCACAAAGGGCAATCCGCACCGCTGAATCGATGATTATGCAGAAAGTAGCATATGCTTCTGAGAGGGTAATGCCTTTC
mRNA sequenceShow/hide mRNA sequence
TCAGACAATATGGACAAGGCCACATACATTAGGTTTCTTGTATCAAATGCTGCTGCTGGTTCTGTGATTGGGAAAGGTGGCTCAACAATTAATGATTTCCAGTCACAGTC
TGGTGCACGAATCCAATTGTCAAGGAATCATGAATTCTTTCCTGGAACCACTGATAGGATCATTATGGTATCTGGATCAATAAATGAAATATTGAAGGCCATGGAACTTG
TTCTTGCTAAGTTGTTGAGTGAGCTTCATGCTGAAGAAGGAGATGATGTTGAACCGAGAACAAAAGTGAGACTGATTGTACCCCATAGTTCTTGTGGAGCTATAATTGGG
AAAGGAGGGTCCACTATAAAGTCATTCATTGAGGACTCTCAAGCTGGCATTAAGATATCCCCCCAGGATAATAACTATATGGGATCCACTGATAGGCTGGTGACACTGTC
TGGAACTATAGAGGAACAGATGCGAGCTACTGACTTGATTGTCTCGAAGCTATCTGAAGATCCACATTACACCCAGTCAATGAATTATCCATTTTCGTACCCGACATCAT
ACAATACTATGAACTACGGATCCAATGGGGGAGCTGGAGGGAGGTTCCAGAACAATAAGGAGGAACGGAGTAACTCCTTGACTATTGGCGTTTCGGATGGCCACATCGGG
TTGGTTGTTGGTCGTGGTGGAAGAAACATACTGGAAATTAGTCAGGCTAGTGGAGCCAGAATTAAGATATCAGATAGAGGAGATTTCATGTCCGGAACCACTGACAGGAA
AGTAACAATTACGGGGTCACAAAGGGCAATCCGCACCGCTGAATCGATGATTATGCAGAAAGTAGCATATGCTTCTGAGAGGGTAATGCCTTTC
Protein sequenceShow/hide protein sequence
SDNMDKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVPHSSCGAIIG
KGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNTMNYGSNGGAGGRFQNNKEERSNSLTIGVSDGHIG
LVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRTAESMIMQKVAYASERVMPF