; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004200 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004200
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlycine-rich RNA-binding family protein
Genome locationscaffold92:788442..792954
RNA-Seq ExpressionMS004200
SyntenyMS004200
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR001878 - Zinc finger, CCHC-type
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648851.1 hypothetical protein Csa_008374 [Cucumis sativus]9.4e-14793.01Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQE GERIISVNKAEPKMGED+DHGYRG GY
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS
        STGGRG   GGGGGD+SARQDECFKCGRLGHWARDCPSVGGGRGR GDSFLARSRLGDSDRGDRFAGD NRYVDDRY+ GGRFGDRDRFD SSRDNKY S
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS

Query:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        RDRYVSDRYPP GDRFGSS Y NDSDRFPVNGYGKDRGYYRDGGPRG+DKYGSGGPARDEGRSYRNRPAPYDRP+R GRPSSFDRY
Subjt:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

XP_004142412.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Cucumis sativus]9.4e-14793.01Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQE GERIISVNKAEPKMGED+DHGYRG GY
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS
        STGGRG   GGGGGD+SARQDECFKCGRLGHWARDCPSVGGGRGR GDSFLARSRLGDSDRGDRFAGD NRYVDDRY+ GGRFGDRDRFD SSRDNKY S
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS

Query:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        RDRYVSDRYPP GDRFGSS Y NDSDRFPVNGYGKDRGYYRDGGPRG+DKYGSGGPARDEGRSYRNRPAPYDRP+R GRPSSFDRY
Subjt:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

XP_008446829.1 PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo]2.7e-14693.71Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQE GERIISVNKAEPKMGED+DHGYRG GY
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS
        STGGR GSYGGGGGD+SARQDECFKCGRLGHWARDCPSVGGGRGR GDSFLARSRLGD DRGDRFAGD NRYVDDRYE GGRFGDRDRFD SSRDNKY S
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS

Query:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        RDRYVSDRYPP GDRFGS  YNNDSDRFPVNGYGKDRGYYRD GPRG+DKYGSGGPARDEGRSYRNRPAPYDRPSR GRPSSFDRY
Subjt:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

XP_022139343.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia]5.5e-15593.98Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGR RGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGRFGDRDRFDSSRDNKYASRDR
        STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDC SVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGRFGDRDRFDSSRDNKYASRDR
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGRFGDRDRFDSSRDNKYASRDR

Query:  YVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRG----------------YYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        YVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRG                YYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
Subjt:  YVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRG----------------YYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

XP_038892830.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida]7.2e-14793.4Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQE GERIISVNKAEPKMGED+DHGYRG GY
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSY--GGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKY
        STGGR GSY  GGGGGD+SARQDECFKCGRLGHWARDCPSVGGGRGR GDSFLAR+RLGDSDRGDRFAGDNNRYVDDRYE GGRFGDRDRFD SSRDNKY
Subjt:  STGGRGGSY--GGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKY

Query:  ASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
         SRDRYVS+RYPP GDRFGSS YNNDSDRFPVNGYGKDRGYYRDGGPRG+DKYGSGGPAR+EGRSYRNRPAPYDRPSR GRPSSFDRY
Subjt:  ASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

TrEMBL top hitse value%identityAlignment
A0A1S3BGN5 glycine-rich RNA-binding protein RZ1C-like isoform X11.3e-14693.71Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQE GERIISVNKAEPKMGED+DHGYRG GY
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS
        STGGR GSYGGGGGD+SARQDECFKCGRLGHWARDCPSVGGGRGR GDSFLARSRLGD DRGDRFAGD NRYVDDRYE GGRFGDRDRFD SSRDNKY S
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS

Query:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        RDRYVSDRYPP GDRFGS  YNNDSDRFPVNGYGKDRGYYRD GPRG+DKYGSGGPARDEGRSYRNRPAPYDRPSR GRPSSFDRY
Subjt:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

A0A5D3CG30 Glycine-rich RNA-binding protein RZ1C-like isoform X11.3e-14693.71Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQE GERIISVNKAEPKMGED+DHGYRG GY
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS
        STGGR GSYGGGGGD+SARQDECFKCGRLGHWARDCPSVGGGRGR GDSFLARSRLGD DRGDRFAGD NRYVDDRYE GGRFGDRDRFD SSRDNKY S
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFD-SSRDNKYAS

Query:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        RDRYVSDRYPP GDRFGS  YNNDSDRFPVNGYGKDRGYYRD GPRG+DKYGSGGPARDEGRSYRNRPAPYDRPSR GRPSSFDRY
Subjt:  RDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

A0A6J1CFE7 glycine-rich RNA-binding protein RZ1C-like isoform X12.7e-15593.98Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGR RGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGRFGDRDRFDSSRDNKYASRDR
        STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDC SVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGRFGDRDRFDSSRDNKYASRDR
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGRFGDRDRFDSSRDNKYASRDR

Query:  YVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRG----------------YYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        YVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRG                YYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
Subjt:  YVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRG----------------YYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

A0A6J1GY86 glycine-rich RNA-binding protein RZ1C-like isoform X12.7e-13988.77Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITER LENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+E GERIISVNKAEPKMGEDIDHGYR    
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFDSSRDNKYASR
                   GGGD+SARQDECFKCGR GHWARDCPSVGGGRGR GDSFL RSRLGDSDRGDRFAGDNNRYVDDRYE GGRFGDRDRFD+SRD+KY +R
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFDSSRDNKYASR

Query:  DRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        DRYVS+RYPP GDRFGSS YNNDSDRFPVNGYGKDRGYYRDGGPRG+DKYGSGGPARDEGRSYRNRPAPYDRPSR GRPSSFDRY
Subjt:  DRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

A0A6J1KMD7 glycine-rich RNA-binding protein RZ1C-like isoform X13.5e-13988.42Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY
        MAGREEYRIFVGGLSWDITER LENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+E GERIISVNKAEPKMGEDIDHGYR    
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGY

Query:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFDSSRDNKYASR
                   GGGD+SARQDECFKCGR GHWARDCPSVGGGRGR GDSFL RSRLGDSDRGDRFAGDNNRYVDDRYE GGRFGDRDRFD+SRD+KY +R
Subjt:  STGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-GGRFGDRDRFDSSRDNKYASR

Query:  DRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY
        DRYVS+RYPP GDRFGSS YNNDSDRFP+NGYGKDRGYYRDGGPRG+DKYGSGGPARDEGRSYRNRPAPYDRPSR GRPSSFDRY
Subjt:  DRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B2.6e-7054Show/hide
Query:  GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKM-GEDIDHGYRGAGYS
        G  E RIFVGGLSWD+TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG DDAI+ MHG+ELG ++ISVNKAEPK+ GED+D   +G GYS
Subjt:  GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKM-GEDIDHGYRGAGYS

Query:  TGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLA-RSRLGDSD-RGDRFAGDN------------NRYVDDR--YEGGRFGDRD
        + G+G             +DECFKC R GHWARDCPS G  R R    LA RSR+GD D   DR+ GD             +RY+D R   +GGR+  RD
Subjt:  TGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLA-RSRLGDSD-RGDRFAGDN------------NRYVDDR--YEGGRFGDRD

Query:  RFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGI-DKYGSGGPARDEGRSYRNRPAPYDRPSR-AGRPSSFDRY
        RFDS   +KY  RD Y  +RY P GDRF S  Y            G++R Y RD   R   D+YG  GP RDEGR YR+RP PYDRPSR  GRPSS++R+
Subjt:  RFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGI-DKYGSGGPARDEGRSYRNRPAPYDRPSR-AGRPSSFDRY

P49311 Glycine-rich RNA-binding protein GRP2A8.1e-2446.15Show/hide
Query:  EYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPK------MGEDIDHGYR-GA
        EYR FVGGL+W   ER LE AFS+FG+++DS+I+ ++ TGR RGFGF+TF D + M DAI  M+GQ+L  R I+VN+A+ +       G     GYR G 
Subjt:  EYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPK------MGEDIDHGYR-GA

Query:  GYSTGG--------RGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRG
        GY  GG         GG Y GGGG  S+R       G  G   RD    GGG G G
Subjt:  GYSTGG--------RGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRG

Q8RWN5 Glycine-rich RNA-binding protein RZ1C1.0e-7455.13Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGED--IDHGYRG-
        MA +E  RIFVGGLS ++T+R LE AFSRFG I+D QIMLE++TGR RGFGFITF+DRR MD++IREMHG++ G+R+ISVN+AEPK+G D    HG RG 
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGED--IDHGYRG-

Query:  --AGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRG---RGDSFLARSRLGDSDRGDRFAG-----DNNRYVDDRYEG-GRFGDRDR
          +GYS  G+G   GGGGG     +DECFKCGR+GHWARDCPS GGGRG    G S  A +  G   R DR+A      D  RY+DDRY+G  R+G RDR
Subjt:  --AGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRG---RGDSFLARSRLGDSDRGDRFAG-----DNNRYVDDRYEG-GRFGDRDR

Query:  FDSSRDNKYASRDRYVSDRYPPSGDRF-GSSGYNNDSDRFPVNGYGKDRGYYRDGGP-RGIDKYG---SGGPAR---DEGRSYRNRP-APYDRPSRAG--
        FDS     Y  RDRY SDRY    DRF G   Y+  SDR+P   Y K R + RD  P  G D+YG   +GGP R   +EGR +R+R  APY+RPSR+G  
Subjt:  FDSSRDNKYASRDRYVSDRYPPSGDRF-GSSGYNNDSDRFPVNGYGKDRGYYRDGGP-RGIDKYG---SGGPAR---DEGRSYRNRP-APYDRPSRAG--

Query:  ----RPSSFDRY
              S+FDRY
Subjt:  ----RPSSFDRY

Q99070 Glycine-rich RNA-binding protein 28.1e-2446.43Show/hide
Query:  EYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGYSTGGR
        EYR FVGGL+W      LE AF+ FG++IDS+++ ++ TGR RGFGF+TFS  + M DAI  M+G+EL  R I+VN+A+ + G     GY G G   GGR
Subjt:  EYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGYSTGGR

Query:  -GGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRG
         GG YGGGGG    R++     G  G+        GGG G
Subjt:  -GGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRG

Q9LIN3 Glycine-rich RNA-binding protein RZ1A5.6e-3337.32Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMG-----EDIDHGY
        M+   EYR F+GGL+W  ++R L +AF ++G +++++++L+K +GR RGFGFITF +++ MD+AI  M+G +L  R I+V+KA+P  G      D D G 
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMG-----EDIDHGY

Query:  RGAGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRY--VDDRY--EGGRFGDRDRFDSSR
        R  GY       S G GGGD       CFKCG+ GH+AR+CPS                    D G RF+  ++RY   DDRY  +  R+G ++    ++
Subjt:  RGAGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRY--VDDRY--EGGRFGDRDRFDSSR

Query:  DNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAG
        D++Y+S+D    DRY    DR+GS            + YG DR   R GG R  D    G P  +     R+  APYDRP   G
Subjt:  DNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAG

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.8e-7154Show/hide
Query:  GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKM-GEDIDHGYRGAGYS
        G  E RIFVGGLSWD+TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG DDAI+ MHG+ELG ++ISVNKAEPK+ GED+D   +G GYS
Subjt:  GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKM-GEDIDHGYRGAGYS

Query:  TGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLA-RSRLGDSD-RGDRFAGDN------------NRYVDDR--YEGGRFGDRD
        + G+G             +DECFKC R GHWARDCPS G  R R    LA RSR+GD D   DR+ GD             +RY+D R   +GGR+  RD
Subjt:  TGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLA-RSRLGDSD-RGDRFAGDN------------NRYVDDR--YEGGRFGDRD

Query:  RFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGI-DKYGSGGPARDEGRSYRNRPAPYDRPSR-AGRPSSFDRY
        RFDS   +KY  RD Y  +RY P GDRF S  Y            G++R Y RD   R   D+YG  GP RDEGR YR+RP PYDRPSR  GRPSS++R+
Subjt:  RFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGI-DKYGSGGPARDEGRSYRNRPAPYDRPSR-AGRPSSFDRY

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.8e-7154Show/hide
Query:  GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKM-GEDIDHGYRGAGYS
        G  E RIFVGGLSWD+TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG DDAI+ MHG+ELG ++ISVNKAEPK+ GED+D   +G GYS
Subjt:  GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKM-GEDIDHGYRGAGYS

Query:  TGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLA-RSRLGDSD-RGDRFAGDN------------NRYVDDR--YEGGRFGDRD
        + G+G             +DECFKC R GHWARDCPS G  R R    LA RSR+GD D   DR+ GD             +RY+D R   +GGR+  RD
Subjt:  TGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLA-RSRLGDSD-RGDRFAGDN------------NRYVDDR--YEGGRFGDRD

Query:  RFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGI-DKYGSGGPARDEGRSYRNRPAPYDRPSR-AGRPSSFDRY
        RFDS   +KY  RD Y  +RY P GDRF S  Y            G++R Y RD   R   D+YG  GP RDEGR YR+RP PYDRPSR  GRPSS++R+
Subjt:  RFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGI-DKYGSGGPARDEGRSYRNRPAPYDRPSR-AGRPSSFDRY

AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain4.0e-3437.32Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMG-----EDIDHGY
        M+   EYR F+GGL+W  ++R L +AF ++G +++++++L+K +GR RGFGFITF +++ MD+AI  M+G +L  R I+V+KA+P  G      D D G 
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMG-----EDIDHGY

Query:  RGAGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRY--VDDRY--EGGRFGDRDRFDSSR
        R  GY       S G GGGD       CFKCG+ GH+AR+CPS                    D G RF+  ++RY   DDRY  +  R+G ++    ++
Subjt:  RGAGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRY--VDDRY--EGGRFGDRDRFDSSR

Query:  DNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAG
        D++Y+S+D    DRY    DR+GS            + YG DR   R GG R  D    G P  +     R+  APYDRP   G
Subjt:  DNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAG

AT4G39260.1 cold, circadian rhythm, and RNA binding 11.7e-2443.4Show/hide
Query:  EYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPK--MGEDIDHGYRGAGYSTG
        EYR FVGGL+W   +  L+  FS+FG +IDS+I+ ++ +GR RGFGF+TF D + M DAI EM+G+EL  R+I+VN+A+ +   G     G  G GY +G
Subjt:  EYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPK--MGEDIDHGYRGAGYSTG

Query:  GRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGD
        G GG  GGGGG  S      ++    G+      S GGG GRG     R   G    GD
Subjt:  GRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGD

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain7.1e-7655.13Show/hide
Query:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGED--IDHGYRG-
        MA +E  RIFVGGLS ++T+R LE AFSRFG I+D QIMLE++TGR RGFGFITF+DRR MD++IREMHG++ G+R+ISVN+AEPK+G D    HG RG 
Subjt:  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGED--IDHGYRG-

Query:  --AGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRG---RGDSFLARSRLGDSDRGDRFAG-----DNNRYVDDRYEG-GRFGDRDR
          +GYS  G+G   GGGGG     +DECFKCGR+GHWARDCPS GGGRG    G S  A +  G   R DR+A      D  RY+DDRY+G  R+G RDR
Subjt:  --AGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCPSVGGGRG---RGDSFLARSRLGDSDRGDRFAG-----DNNRYVDDRYEG-GRFGDRDR

Query:  FDSSRDNKYASRDRYVSDRYPPSGDRF-GSSGYNNDSDRFPVNGYGKDRGYYRDGGP-RGIDKYG---SGGPAR---DEGRSYRNRP-APYDRPSRAG--
        FDS     Y  RDRY SDRY    DRF G   Y+  SDR+P   Y K R + RD  P  G D+YG   +GGP R   +EGR +R+R  APY+RPSR+G  
Subjt:  FDSSRDNKYASRDRYVSDRYPPSGDRF-GSSGYNNDSDRFPVNGYGKDRGYYRDGGP-RGIDKYG---SGGPAR---DEGRSYRNRP-APYDRPSRAG--

Query:  ----RPSSFDRY
              S+FDRY
Subjt:  ----RPSSFDRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGGAGAGAAGAGTACCGAATATTTGTGGGAGGGTTATCGTGGGACATCACGGAGCGTCAGCTCGAGAATGCCTTCAGTCGCTTCGGCAAAATTATCGATTCTCA
GATCATGTTGGAAAAAAATACAGGACGCCCTCGTGGTTTCGGGTTTATTACGTTTTCAGATCGCCGGGGAATGGATGATGCAATCAGAGAGATGCATGGACAGGAATTGG
GAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATTGACCATGGTTACAGGGGGGCAGGCTACTCAACTGGTGGCAGAGGGGGTAGCTATGGG
GGTGGGGGAGGAGATAAATCTGCGAGGCAAGATGAATGCTTCAAATGCGGGCGTCTTGGACACTGGGCCAGAGATTGTCCTTCAGTGGGTGGTGGTCGAGGAAGAGGAGA
TTCATTTCTTGCACGTTCCCGGCTGGGGGATAGTGATCGTGGGGATCGCTTCGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGGCGTTTTGGAGATA
GAGATCGTTTTGATAGCAGCAGGGATAACAAGTATGCGAGTCGTGATCGCTACGTTAGTGACAGGTACCCACCCAGTGGAGATCGCTTTGGAAGCAGTGGGTATAATAAC
GACTCTGATCGATTTCCTGTAAATGGGTATGGCAAAGATAGGGGCTATTATAGAGATGGCGGGCCTCGTGGCATCGATAAGTATGGAAGTGGAGGTCCAGCACGTGACGA
GGGAAGAAGCTACAGAAACAGACCAGCTCCTTATGATCGCCCTAGCCGAGCTGGGCGGCCATCATCATTTGACCGTTAT
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGGAGAGAAGAGTACCGAATATTTGTGGGAGGGTTATCGTGGGACATCACGGAGCGTCAGCTCGAGAATGCCTTCAGTCGCTTCGGCAAAATTATCGATTCTCA
GATCATGTTGGAAAAAAATACAGGACGCCCTCGTGGTTTCGGGTTTATTACGTTTTCAGATCGCCGGGGAATGGATGATGCAATCAGAGAGATGCATGGACAGGAATTGG
GAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATTGACCATGGTTACAGGGGGGCAGGCTACTCAACTGGTGGCAGAGGGGGTAGCTATGGG
GGTGGGGGAGGAGATAAATCTGCGAGGCAAGATGAATGCTTCAAATGCGGGCGTCTTGGACACTGGGCCAGAGATTGTCCTTCAGTGGGTGGTGGTCGAGGAAGAGGAGA
TTCATTTCTTGCACGTTCCCGGCTGGGGGATAGTGATCGTGGGGATCGCTTCGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGGCGTTTTGGAGATA
GAGATCGTTTTGATAGCAGCAGGGATAACAAGTATGCGAGTCGTGATCGCTACGTTAGTGACAGGTACCCACCCAGTGGAGATCGCTTTGGAAGCAGTGGGTATAATAAC
GACTCTGATCGATTTCCTGTAAATGGGTATGGCAAAGATAGGGGCTATTATAGAGATGGCGGGCCTCGTGGCATCGATAAGTATGGAAGTGGAGGTCCAGCACGTGACGA
GGGAAGAAGCTACAGAAACAGACCAGCTCCTTATGATCGCCCTAGCCGAGCTGGGCGGCCATCATCATTTGACCGTTAT
Protein sequenceShow/hide protein sequence
MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGYSTGGRGGSYG
GGGGDKSARQDECFKCGRLGHWARDCPSVGGGRGRGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGRFGDRDRFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNN
DSDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDRY