; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004235 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004235
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionloricrin-like
Genome locationscaffold92:1023549..1024160
RNA-Seq ExpressionMS004235
SyntenyMS004235
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601160.1 hypothetical protein SDJN03_06393, partial [Cucurbita argyrosperma subsp. sororia]4.0e-3071.14Show/hide
Query:  IPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTS--GAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGGGGG
        +PAFCPPLSPFESAPPFSFN   V GAGGGDE TS  GAGGEML  GGGGG  SV FD  GGGGG  V LDGGGGGG  V LDG GGGG+ V LDG GGG
Subjt:  IPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTS--GAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGGGGG

Query:  GVSVPLDGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGGGGG
        G+ V LDG GGGG  V  DG GGGG  V LDGGGGG  SV  +GGGGGG
Subjt:  GVSVPLDGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGGGGG

XP_016900208.1 PREDICTED: loricrin-like [Cucumis melo]8.1e-3176.62Show/hide
Query:  GGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGG
        GGGGG+E V  D   GGGG SV LD GGGGG SV  DGGGGGGVSV  DGGGGGGVSV  DGGGGGG SV FDGGGGGG  V LDGGGGGGVSV  D GG
Subjt:  GGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGG

Query:  GGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGGGGGGVTVPLDGGGGGGAS
        GGGVSV  D GGGGGVSV LD GGGGG SV LD GGGGGGV+V LDGGGGG AS
Subjt:  GGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGGGGGGVTVPLDGGGGGGAS

XP_022957272.1 loricrin-like [Cucurbita moschata]3.2e-2772.18Show/hide
Query:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTS--GAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLD
        ITP A+PAFCPPLSPFESAPPFSFN   V GAGGGDE TS  GAGGEML  GGGGG  SV FD  GGGGG  V LDGGGGGG  V LDG GGGG+ V LD
Subjt:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTS--GAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLD

Query:  GGGGGGVSVPLDGGGGGGASVP---FDGGGGGG
        G GGGG+ V LDGGGGGG   P   F+GGGGGG
Subjt:  GGGGGGVSVPLDGGGGGGASVP---FDGGGGGG

XP_022990509.1 glycine-rich cell wall structural protein 1.0-like [Cucurbita maxima]4.9e-2872.87Show/hide
Query:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGG
        ITPK +PAFCPPLSPFESAPPFSFN S V+GAGGGDE TSG G       GGGG  SV FD GGGGGG    LDGGGGGG  V LDGGGGGG+ V LDG 
Subjt:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGG

Query:  GGGGVSVPLDGGGGGGA-SVPFDGGGGGG
        GGGG+ V LDGGGGGGA SV F+GGGGGG
Subjt:  GGGGVSVPLDGGGGGGA-SVPFDGGGGGG

XP_031741791.1 glycine-rich protein 23-like [Cucumis sativus]5.2e-5473.36Show/hide
Query:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPT--SGAGGEMLTFGGGGGEESVPFD---------DGGGGGGASVPLDGGGGGGASVPLDGGG
        ITP AIPAFCPPL+PFE  PPFSFN    +G GGGDEP    GAGG++    GGGG E V  D         DG GGGGASV L GGGGGGASV LDGGG
Subjt:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPT--SGAGGEMLTFGGGGGEESVPFD---------DGGGGGGASVPLDGGGGGGASVPLDGGG

Query:  GGGVSVPLDGGGGGGVSVPLDGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGGGGGG
        GGG SV LDGGGGGG SV LDGGGGGGASV  DGGGGGG SV LDGGGGGG SV LDGGGGGG SV LDGGGGGG SV LD GGGGGASV LD GGGGGG
Subjt:  GGGVSVPLDGGGGGGVSVPLDGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGGGGGG

Query:  VTVPLDGGGGGGAS
         +V LDGGGGGGAS
Subjt:  VTVPLDGGGGGGAS

TrEMBL top hitse value%identityAlignment
A0A1S4DW63 loricrin-like3.9e-3176.62Show/hide
Query:  GGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGG
        GGGGG+E V  D   GGGG SV LD GGGGG SV  DGGGGGGVSV  DGGGGGGVSV  DGGGGGG SV FDGGGGGG  V LDGGGGGGVSV  D GG
Subjt:  GGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGG

Query:  GGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGGGGGGVTVPLDGGGGGGAS
        GGGVSV  D GGGGGVSV LD GGGGG SV LD GGGGGGV+V LDGGGGG AS
Subjt:  GGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGGGGGGVTVPLDGGGGGGAS

A0A6J1GYP3 loricrin-like1.5e-2772.18Show/hide
Query:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTS--GAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLD
        ITP A+PAFCPPLSPFESAPPFSFN   V GAGGGDE TS  GAGGEML  GGGGG  SV FD  GGGGG  V LDGGGGGG  V LDG GGGG+ V LD
Subjt:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTS--GAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLD

Query:  GGGGGGVSVPLDGGGGGGASVP---FDGGGGGG
        G GGGG+ V LDGGGGGG   P   F+GGGGGG
Subjt:  GGGGGGVSVPLDGGGGGGASVP---FDGGGGGG

A0A6J1JS83 glycine-rich cell wall structural protein 1.0-like2.4e-2872.87Show/hide
Query:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGG
        ITPK +PAFCPPLSPFESAPPFSFN S V+GAGGGDE TSG G       GGGG  SV FD GGGGGG    LDGGGGGG  V LDGGGGGG+ V LDG 
Subjt:  ITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGG

Query:  GGGGVSVPLDGGGGGGA-SVPFDGGGGGG
        GGGG+ V LDGGGGGGA SV F+GGGGGG
Subjt:  GGGGVSVPLDGGGGGGA-SVPFDGGGGGG

A0A7I8IHU7 Hypothetical protein1.7e-1852.45Show/hide
Query:  GSCVLGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGG-------GGGGVSVPLDGGGGGGAS
        GSC  G GG   P  G GG     GGGGG        GGGGGGA +PL GGGGGG      GGGGGG  +PL GG       GGGG  +PL GGGGGGA 
Subjt:  GSCVLGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGG-------GGGGVSVPLDGGGGGGAS

Query:  VPFDGG-------GGGGASVPLDGG-------GGGGVSVPLDGGGGGGVSVPLDGG-------GGGGVSVPLDRGGGGGASVPLDGGGGGGGVTVPLDGG
        +P  GG       GGGGA +PL GG       GGGG  +PL GGGGGG  +PL GG       GGGG  +PL  GGGGG      GGGGGGG  +PL GG
Subjt:  VPFDGG-------GGGGASVPLDGG-------GGGGVSVPLDGGGGGGVSVPLDGG-------GGGGVSVPLDRGGGGGASVPLDGGGGGGGVTVPLDGG

Query:  GGGG
        GGGG
Subjt:  GGGG

A0A7I8K922 Hypothetical protein2.2e-1851.44Show/hide
Query:  LGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPL---------DGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGG-------G
        LG GGG     G GG  +  GGGGG        GGGGGGA +PL          GGGGGGA +PL GGGGGG      GGGGGG  +PL GG       G
Subjt:  LGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPL---------DGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGG-------G

Query:  GGGASVPFDGGGGGGASVPLDGG-------GGGGVSVPLDGG-------GGGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGG------GGGGVTVP
        GGGA +P  GGGGGGA +PL GG       GGGG  +PL GG       GGGG  +PL GGGGGG       GGGGGA +PL GGG      GGGG  +P
Subjt:  GGGASVPFDGGGGGGASVPLDGG-------GGGGVSVPLDGG-------GGGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGG------GGGGVTVP

Query:  LDGGGGGG
        L GGGGGG
Subjt:  LDGGGGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAATCACTCCTAAGGCGATACCTGCCTTTTGTCCACCACTCAGCCCTTTTGAATCTGCGCCACCCTTTTCATTCAACGGTAGCTGTGTGCTTGGCGCCGGCGGCGGAGA
TGAACCAACGTCTGGCGCAGGTGGTGAGATGTTGACATTCGGTGGTGGCGGTGGAGAGGAGTCCGTCCCGTTCGACGACGGTGGTGGCGGAGGTGGAGCATCGGTCCCAT
TGGATGGGGGTGGCGGAGGTGGAGCATCGGTCCCGTTGGATGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTGGACGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTG
GACGGCGGTGGCGGAGGTGGAGCATCGGTTCCGTTCGATGGGGGTGGCGGAGGTGGAGCATCGGTCCCGTTGGACGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTGGA
CGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTGGACGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTGGACAGGGGTGGCGGAGGTGGAGCATCGGTCCCGTTGGATG
GCGGTGGCGGAGGCGGTGGAGTGACGGTCCCGTTGGACGGGGGTGGCGGAGGTGGAGCATCG
mRNA sequenceShow/hide mRNA sequence
GCAATCACTCCTAAGGCGATACCTGCCTTTTGTCCACCACTCAGCCCTTTTGAATCTGCGCCACCCTTTTCATTCAACGGTAGCTGTGTGCTTGGCGCCGGCGGCGGAGA
TGAACCAACGTCTGGCGCAGGTGGTGAGATGTTGACATTCGGTGGTGGCGGTGGAGAGGAGTCCGTCCCGTTCGACGACGGTGGTGGCGGAGGTGGAGCATCGGTCCCAT
TGGATGGGGGTGGCGGAGGTGGAGCATCGGTCCCGTTGGATGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTGGACGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTG
GACGGCGGTGGCGGAGGTGGAGCATCGGTTCCGTTCGATGGGGGTGGCGGAGGTGGAGCATCGGTCCCGTTGGACGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTGGA
CGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTGGACGGCGGTGGCGGAGGTGGAGTGTCGGTCCCGTTGGACAGGGGTGGCGGAGGTGGAGCATCGGTCCCGTTGGATG
GCGGTGGCGGAGGCGGTGGAGTGACGGTCCCGTTGGACGGGGGTGGCGGAGGTGGAGCATCG
Protein sequenceShow/hide protein sequence
AITPKAIPAFCPPLSPFESAPPFSFNGSCVLGAGGGDEPTSGAGGEMLTFGGGGGEESVPFDDGGGGGGASVPLDGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPL
DGGGGGGASVPFDGGGGGGASVPLDGGGGGGVSVPLDGGGGGGVSVPLDGGGGGGVSVPLDRGGGGGASVPLDGGGGGGGVTVPLDGGGGGGAS