; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004275 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004275
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationscaffold92:1430152..1431592
RNA-Seq ExpressionMS004275
SyntenyMS004275
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034761.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]7.6e-13481.9Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-
        MLGLRDVLFIAPTPSSLHQQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLP  QPPP      +V++R R  DNLKRTQDFGFGKG+SLI G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-

Query:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
        GNN  DE V+GDAGD SM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Subjt:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS

Query:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQ----------------DASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLY
        QS AAAAA      ASTSNATTPRSFET+S+HQ                DASFKKSLPG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLY
Subjt:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQ----------------DASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLY

Query:  DQGIDDKNGFPSVSHLHLESGNHHHK
        DQG DDKN FPS+SHLHL+SGNHH +
Subjt:  DQGIDDKNGFPSVSHLHLESGNHHHK

XP_004142483.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]1.9e-13786.45Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-
        MLGLRDVLFIAPTPSSLHQQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLP  QPPP      +V++R R  DNLKRTQDFGFGKG+SLIAG 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-

Query:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
        GNN  DE V+GDAGD SM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Subjt:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS

Query:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL
        QS AAAAA      ASTSNATTPRSFET+S+HQDASFKKSLPG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKN FPS+SHL
Subjt:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL

Query:  HLESGNHHHK
        HL+SGNHH +
Subjt:  HLESGNHHHK

XP_008446964.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]5.6e-13786.13Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-
        MLGLRDVLFIAPTPSSLHQQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLP  QPPP      +V++R R  DNLKRTQDFGFGKG+SLI G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-

Query:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
        GNN  DE V+GDAGD SM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Subjt:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS

Query:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL
        QS AAAAA      ASTSNATTPRSFET+S+HQDASFKKSLPG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKN FPS+SHL
Subjt:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL

Query:  HLESGNHHHK
        HL+SGNHH +
Subjt:  HLESGNHHHK

XP_022138928.1 protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia]2.2e-16599.67Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNA
        MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNA
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNA

Query:  LDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTA
        LDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST 
Subjt:  LDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTA

Query:  AAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLES
        AAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLES
Subjt:  AAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLES

Query:  GNHHHK
        GNHHHK
Subjt:  GNHHHK

XP_038892899.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]8.7e-13886.64Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPP-PPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-G
        MLGLRDVLFIAPTPSSLHQQ TQIISSDHHPSLPLPSSAALGVSVGIFPLL ATPCLP P P P   A +V++R R ++NLKRTQDFGFGKGDSL+ G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPP-PPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-G

Query:  NNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
        NN  DE V+GDAGD SM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  STAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLH
        STAAAAA      ASTSNATTPRSFET+S+HQDASFKKSLPG VRAPAVFRCHRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQG DDKN FPS+SHLH
Subjt:  STAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLH

Query:  LESGNHH
        L+SGNHH
Subjt:  LESGNHH

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein9.4e-13886.45Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-
        MLGLRDVLFIAPTPSSLHQQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLP  QPPP      +V++R R  DNLKRTQDFGFGKG+SLIAG 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-

Query:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
        GNN  DE V+GDAGD SM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Subjt:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS

Query:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL
        QS AAAAA      ASTSNATTPRSFET+S+HQDASFKKSLPG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKN FPS+SHL
Subjt:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL

Query:  HLESGNHHHK
        HL+SGNHH +
Subjt:  HLESGNHHHK

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 12.7e-13786.13Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-
        MLGLRDVLFIAPTPSSLHQQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLP  QPPP      +V++R R  DNLKRTQDFGFGKG+SLI G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-

Query:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
        GNN  DE V+GDAGD SM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Subjt:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS

Query:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL
        QS AAAAA      ASTSNATTPRSFET+S+HQDASFKKSLPG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKN FPS+SHL
Subjt:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL

Query:  HLESGNHHHK
        HL+SGNHH +
Subjt:  HLESGNHHHK

A0A5D3CCT8 Protein LATERAL ROOT PRIMORDIUM 13.7e-13481.9Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-
        MLGLRDVLFIAPTPSSLHQQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLP  QPPP      +V++R R  DNLKRTQDFGFGKG+SLI G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP--QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-

Query:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
        GNN  DE V+GDAGD SM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Subjt:  GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS

Query:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQ----------------DASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLY
        QS AAAAA      ASTSNATTPRSFET+S+HQ                DASFKKSLPG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLY
Subjt:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQ----------------DASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLY

Query:  DQGIDDKNGFPSVSHLHLESGNHHHK
        DQG DDKN FPS+SHLHL+SGNHH +
Subjt:  DQGIDDKNGFPSVSHLHLESGNHHHK

A0A6J1CEG6 protein LATERAL ROOT PRIMORDIUM 11.1e-16599.67Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNA
        MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNA
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNA

Query:  LDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTA
        LDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST 
Subjt:  LDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTA

Query:  AAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLES
        AAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLES
Subjt:  AAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLES

Query:  GNHHHK
        GNHHHK
Subjt:  GNHHHK

A0A6J1GXY1 protein LATERAL ROOT PRIMORDIUM 1-like2.3e-12882.24Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLI-AGGNN
        MLGLRDVLFIAPTPSSLHQ  TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCL QPPP   P       R ++NLKRTQDFGFGKGDSLI  GGN+
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLI-AGGNN

Query:  ALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST
          D+ V+GD GD S+GVCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV A+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ+T
Subjt:  ALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST

Query:  AAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLE
        AAAAA      ASTSNATTPRSFET+S+HQDASFKKSLPGQV+APAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQG D KN  PS+SHLHLE
Subjt:  AAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLE

Query:  SGNH
        SGNH
Subjt:  SGNH

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 21.5e-2843.46Show/hide
Query:  CRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAAASASHASTSNA
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+  ARRRERQ  + M    + SG GG SGS  AG       IP +         S+S    S++
Subjt:  CRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAAASASHASTSNA

Query:  TTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLESGNHHHK
              E            S PG+V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG       P  S++   SG   H+
Subjt:  TTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLESGNHHHK

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 19.5e-5547.27Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-
        M+GLRDV  +AP   + H Q   +IS   H +    ++AALG  VG+ PLL A    PQ          +   R     +N   TQ   F   +    G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-

Query:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP
          NN+        +G S    C+DCGN+AKKEC  RRCRTCCK RG  CSTHVKSTWVSAARRRERQ++        A+   GSS S+S+G K+PR++  
Subjt:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP

Query:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQD-ASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS
         Q     A     SH STSN T P+SFETSS+ QD    +++ PGQVRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K GFPS+S
Subjt:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQD-ASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS

Query:  HLHLESGNHHH
         LHL    ++H
Subjt:  HLHLESGNHHH

Q9FXH7 Protein SHI RELATED SEQUENCE 73.2e-2641.15Show/hide
Query:  EPVRGDAGDSSMG-----VCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQ-MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
        EPVR   G  ++       C+DCGN+AKK+C + RCRTCCK RG  C THVKSTWVSAA+RRERQ  L V+        +    G      K       +
Subjt:  EPVRGDAGDSSMG-----VCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQ-MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS

Query:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL
         S    +A A     + S++      ETS           LP ++ +PAVFRC RV++I   + E AYQ  V+IGGHVFKG LYDQG    +   S S L
Subjt:  QSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHL

Query:  HLESGNHHH
        + E+ + HH
Subjt:  HLESGNHHH

Q9M2U4 Protein SHI RELATED SEQUENCE 61.5e-2841.11Show/hide
Query:  VCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAAASASHASTSN
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+ ++  R                      SSS   ++ ++ I  QS+   +            
Subjt:  VCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAAASASHASTSN

Query:  ATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS
                T+++ Q+  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G+D    FP +S
Subjt:  ATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS

Q9SD40 Protein SHI RELATED SEQUENCE 19.3e-2641.85Show/hide
Query:  GDAGDSSMGV-CRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAA
        G +G  S GV C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWV AA+RRERQ  +      T    G S        KR R  +P+ S++     
Subjt:  GDAGDSSMGV-CRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAA

Query:  ASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNG
           SH+                        + P +V + AVFRC RV+++  GE E AYQ  V+IGGH+FKG LYD G     G
Subjt:  ASASHASTSNATTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNG

Arabidopsis top hitse value%identityAlignment
AT4G36260.1 Lateral root primordium (LRP) protein-related1.1e-2943.46Show/hide
Query:  CRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAAASASHASTSNA
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+  ARRRERQ  + M    + SG GG SGS  AG       IP +         S+S    S++
Subjt:  CRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAAASASHASTSNA

Query:  TTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLESGNHHHK
              E            S PG+V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG       P  S++   SG   H+
Subjt:  TTPRSFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLESGNHHHK

AT5G12330.1 Lateral root primordium (LRP) protein-related6.8e-5647.27Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-
        M+GLRDV  +AP   + H Q   +IS   H +    ++AALG  VG+ PLL A    PQ          +   R     +N   TQ   F   +    G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-

Query:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP
          NN+        +G S    C+DCGN+AKKEC  RRCRTCCK RG  CSTHVKSTWVSAARRRERQ++        A+   GSS S+S+G K+PR++  
Subjt:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP

Query:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQD-ASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS
         Q     A     SH STSN T P+SFETSS+ QD    +++ PGQVRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K GFPS+S
Subjt:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQD-ASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS

Query:  HLHLESGNHHH
         LHL    ++H
Subjt:  HLHLESGNHHH

AT5G12330.2 Lateral root primordium (LRP) protein-related6.8e-5647.27Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-
        M+GLRDV  +AP   + H Q   +IS   H +    ++AALG  VG+ PLL A    PQ          +   R     +N   TQ   F   +    G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-

Query:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP
          NN+        +G S    C+DCGN+AKKEC  RRCRTCCK RG  CSTHVKSTWVSAARRRERQ++        A+   GSS S+S+G K+PR++  
Subjt:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP

Query:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQD-ASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS
         Q     A     SH STSN T P+SFETSS+ QD    +++ PGQVRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K GFPS+S
Subjt:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQD-ASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS

Query:  HLHLESGNHHH
         LHL    ++H
Subjt:  HLHLESGNHHH

AT5G12330.3 Lateral root primordium (LRP) protein-related7.1e-2943.39Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-
        M+GLRDV  +AP   + H Q   +IS   H +    ++AALG  VG+ PLL A    PQ          +   R     +N   TQ   F   +    G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-

Query:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP
          NN+        +G S    C+DCGN+AKKEC  RRCRTCCK RG  CSTHVKSTWVSAARRRERQ++        A+   GSS S+S+G K+PR++  
Subjt:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP

Query:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSL
         Q     A     SH STSN T P+SFETSS+ Q  SF  SL
Subjt:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSL

AT5G12330.4 Lateral root primordium (LRP) protein-related6.8e-5647.27Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-
        M+GLRDV  +AP   + H Q   +IS   H +    ++AALG  VG+ PLL A    PQ          +   R     +N   TQ   F   +    G 
Subjt:  MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERR---GVDNLKRTQDFGFGKGDSLIAG-

Query:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP
          NN+        +G S    C+DCGN+AKKEC  RRCRTCCK RG  CSTHVKSTWVSAARRRERQ++        A+   GSS S+S+G K+PR++  
Subjt:  -GNNALDEPVRGDAGDSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP

Query:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQD-ASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS
         Q     A     SH STSN T P+SFETSS+ QD    +++ PGQVRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K GFPS+S
Subjt:  SQSTAAAAAAASASHASTSNATTPRSFETSSNHQD-ASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVS

Query:  HLHLESGNHHH
         LHL    ++H
Subjt:  HLHLESGNHHH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTCTCCGAGATGTTCTCTTTATAGCTCCCACGCCTTCTTCTCTCCATCAACAGACAACCCAAATCATTTCCTCCGATCACCACCCATCTCTTCCTCTCCCTTC
CTCCGCCGCTCTCGGCGTCAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCAGCCGCCGCCGCCGCCGCCCCCGGCCGCCGAAGTTAGCGAGCGCA
GGGGTGTGGACAATCTGAAGAGAACCCAGGATTTCGGATTCGGGAAAGGGGATTCGTTGATCGCCGGCGGGAATAATGCCCTCGACGAGCCGGTGAGAGGCGACGCCGGC
GATTCCTCCATGGGCGTGTGCAGGGACTGCGGAAACAGAGCCAAAAAGGAGTGCGATTATCGGAGGTGCAGGACGTGTTGTAAAGGGCGTGGGAATCATTGCTCCACGCA
CGTCAAGAGCACGTGGGTGTCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCACCGCTAGTGGCGACGGTGGGTCTTCTGGGTCTTCTT
CCGCTGGCGCTAAAAGGCCTAGAGTTCTGATTCCATCACAGAGTACTGCCGCCGCCGCCGCCGCCGCCTCCGCCTCTCACGCCTCCACCTCCAATGCCACCACTCCCCGG
AGCTTCGAAACAAGTTCTAACCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCAAGTTCGAGCACCGGCCGTGTTCAGGTGCCATAGAGTGACAGCCATTAGCAG
TGGGGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAATTGATGACAAAAATGGCTTCCCATCTGTTT
CACACCTCCATCTGGAAAGTGGTAACCACCACCACAAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGTCTCCGAGATGTTCTCTTTATAGCTCCCACGCCTTCTTCTCTCCATCAACAGACAACCCAAATCATTTCCTCCGATCACCACCCATCTCTTCCTCTCCCTTC
CTCCGCCGCTCTCGGCGTCAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCAGCCGCCGCCGCCGCCGCCCCCGGCCGCCGAAGTTAGCGAGCGCA
GGGGTGTGGACAATCTGAAGAGAACCCAGGATTTCGGATTCGGGAAAGGGGATTCGTTGATCGCCGGCGGGAATAATGCCCTCGACGAGCCGGTGAGAGGCGACGCCGGC
GATTCCTCCATGGGCGTGTGCAGGGACTGCGGAAACAGAGCCAAAAAGGAGTGCGATTATCGGAGGTGCAGGACGTGTTGTAAAGGGCGTGGGAATCATTGCTCCACGCA
CGTCAAGAGCACGTGGGTGTCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCACCGCTAGTGGCGACGGTGGGTCTTCTGGGTCTTCTT
CCGCTGGCGCTAAAAGGCCTAGAGTTCTGATTCCATCACAGAGTACTGCCGCCGCCGCCGCCGCCGCCTCCGCCTCTCACGCCTCCACCTCCAATGCCACCACTCCCCGG
AGCTTCGAAACAAGTTCTAACCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCAAGTTCGAGCACCGGCCGTGTTCAGGTGCCATAGAGTGACAGCCATTAGCAG
TGGGGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAATTGATGACAAAAATGGCTTCCCATCTGTTT
CACACCTCCATCTGGAAAGTGGTAACCACCACCACAAG
Protein sequenceShow/hide protein sequence
MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQPPPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNALDEPVRGDAG
DSSMGVCRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAAASASHASTSNATTPR
SFETSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLESGNHHHK