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MS004284 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004284
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsigma factor binding protein 1, chloroplastic-like
Genome locationscaffold92:1505130..1505591
RNA-Seq ExpressionMS004284
SyntenyMS004284
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4368.79Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA +DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE+++  YQSS+APP+DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Subjt:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
XP_022139181.1 uncharacterized protein LOC111010149 [Momordica charantia]1.1e-7297.42Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI-AAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI AAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI-AAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
        LVSGNIESS   YQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Subjt:  LVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
XP_022945563.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]1.1e-4368.79Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA +DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE+++  YQSS+APP+DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Subjt:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
XP_022966872.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima]4.1e-4368.15Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  ++Q+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA +DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE+++  YQSS+APP+DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Subjt:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]1.4e-4368.79Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA +DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE+++  YQSS+APP+DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Subjt:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
TrEMBL top hitse value%identityAlignment
A0A6J1CBX0 uncharacterized protein LOC1110101495.3e-7397.42Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI-AAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI AAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI-AAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
        LVSGNIESS   YQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Subjt:  LVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
A0A6J1G190 sigma factor binding protein 1, chloroplastic-like5.2e-4468.79Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA +DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE+++  YQSS+APP+DL+++NFDA+FA+MF  FLHD SSTQT+MPG + L
Subjt:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like1.7e-3469.06Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRL
        MDVIG+K  K  R+KKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELI   AADRN      S+AFLD+Q+L   DD+ IDRD  HRL
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRL

Query:  VSGNIESSSSLYQSSIAPP-DDLILQNFDANFADMFHGF
        V+G IE+++  YQS +APP DD +LQNFDA+F +M HGF
Subjt:  VSGNIESSSSLYQSSIAPP-DDLILQNFDANFADMFHGF
A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like2.0e-4368.15Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  ++Q+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA +DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAA-ADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
        RLV+G IE+++  YQSS+APP+DL++QNFDA+FA+MF  FLH+ SSTQT+MPG + L
Subjt:  RLVSGNIESSSSLYQSSIAPPDDLILQNFDANFADMFHGFLHD-SSTQTQMPGLALL
D1MWZ4 Sigma factor binding protein 12.0e-3562.89Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRL
        M+V G+KQAK R  K +AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFMEL A+AA+DRN LQ S+SA F D+QLL   DDD +        
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRL

Query:  VSGNIESSSSLYQSSIA---PPDDL-ILQNFDANFADMFHGFLHDSST-QTQMPGLALL
        V+G +E+++  Y+SS+A   PPDDL +L N DA+F  MFHGF  DS T Q +MPGL  L
Subjt:  VSGNIESSSSLYQSSIA---PPDDL-ILQNFDANFADMFHGFLHDSST-QTQMPGLALL
SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic1.3e-0444.29Show/hide
Query:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQP
        + RK  K ++   S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E I + ++D ++L P
Subjt:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQP
Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein8.0e-0557.5Show/hide
Query:  RRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        R+S  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  RRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
AT3G56710.1 sigma factor binding protein 19.4e-0644.29Show/hide
Query:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQP
        + RK  K ++   S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E I + ++D ++L P
Subjt:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTCTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTC
CAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTGATCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCATCGT
CGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGATCGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTCGTCG
TTGTATCAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTTGCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCA
GATGCCGGGTTTGGCACTACTG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTCTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTC
CAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTGATCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCATCGT
CGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGATCGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTCGTCG
TTGTATCAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTTGCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCA
GATGCCGGGTTTGGCACTACTG
Protein sequenceShow/hide protein sequence
MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSSS
LYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL