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MS004294 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004294
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncilia- and flagella-associated protein 20
Genome locationscaffold92:1588543..1589338
RNA-Seq ExpressionMS004294
SyntenyMS004294
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007714 - CFA20 domain
IPR040441 - Cilia- and flagella-associated protein 20/CFAP20DC


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034775.1 cilia- and flagella-associated protein 20 isoform X3 [Cucumis melo var. makuwa]2.7e-8598.14Show/hide
Query:  SNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGW
        SNGHIKRPQDEDIQSNVLEIVGSKIQ+TYITCPADPA+TLGIKLPFLVIIVKNL KYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGW
Subjt:  SNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGW

Query:  NHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK
        NHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK
Subjt:  NHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK

XP_022139282.1 cilia- and flagella-associated protein 20 isoform X1 [Momordica charantia]1.9e-86100Show/hide
Query:  AVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDE
        AVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDE
Subjt:  AVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDE

Query:  GWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        GWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
Subjt:  GWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

XP_022139283.1 cilia- and flagella-associated protein 20 isoform X2 [Momordica charantia]5.5e-86100Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

XP_038892068.1 cilia- and flagella-associated protein 20 isoform X1 [Benincasa hispida]3.5e-8598.12Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        VSNGHIKRPQDEDIQSNVLEIVGSK+QSTYITCPADPA+TLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSE+ELPPEFKLYLPTQ
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

XP_038892069.1 cilia- and flagella-associated protein 20 isoform X2 [Benincasa hispida]3.5e-8598.12Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        VSNGHIKRPQDEDIQSNVLEIVGSK+QSTYITCPADPA+TLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSE+ELPPEFKLYLPTQ
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

TrEMBL top hitse value%identityAlignment
A0A0A0KTS7 DUF667 domain-containing protein1.0e-8596.34Show/hide
Query:  SFLAVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLR
        S + VSNGHIKRPQDEDIQSNVLEIVGSKIQ+TYITCPADPA+TLGIKLPFLVIIVKNL KYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLR
Subjt:  SFLAVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLR

Query:  MDEGWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        MDEGWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
Subjt:  MDEGWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

A0A5A7SZY2 Cilia-and flagella-associated protein 20 isoform X31.3e-8598.14Show/hide
Query:  SNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGW
        SNGHIKRPQDEDIQSNVLEIVGSKIQ+TYITCPADPA+TLGIKLPFLVIIVKNL KYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGW
Subjt:  SNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGW

Query:  NHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK
        NHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK
Subjt:  NHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK

A0A6J1CDI8 cilia- and flagella-associated protein 20 isoform X19.1e-87100Show/hide
Query:  AVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDE
        AVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDE
Subjt:  AVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDE

Query:  GWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        GWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
Subjt:  GWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

A0A6J1CFC1 cilia- and flagella-associated protein 20 isoform X22.6e-86100Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

A0A6J1FZ95 cilia- and flagella-associated protein 203.8e-8598.12Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        VSNGHIKRPQDEDIQSNV+EIVGSK+QSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        WNHIQLNLAD TRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

SwissProt top hitse value%identityAlignment
Q5ZHP3 Cilia- and flagella-associated protein 201.9e-7378.4Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        V NGHIKR  D DIQS VLEI G+ + +TYITCPADP  TLGIKLPFLV+I+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICTMP+R+D+G
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK
        WN IQ NL+DFTRRAYGTNY+ETLRVQ+HANCR+RR+YF+DRLYSE+ELP EFKLYLP Q K
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK

Q6B857 Cilia- and flagella-associated protein 201.9e-7378.4Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        V NGHIKR  D DIQS VLEI G+ + +TYITCPADP  TLGIKLPFLV+I+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICTMP+R+D+G
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK
        WN IQ NL+DFTRRAYGTNY+ETLRVQ+HANCR+RR+YF+DRLYSE+ELP EFKLYLP Q K
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK

Q6PBJ2 Cilia- and flagella-associated protein 202.5e-7377.78Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        V NGHIKR  D DIQS VLE+ G+ + +TYITCPADP  TLGIKLPFLV+I+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICTMP+R+D+G
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK
        WN IQ NL+DFTRRAYGTNY+ETLRVQ+HANCR+RR+YF+DRLYSE+ELP EFKLYLP Q K
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK

Q8BTU1 Cilia- and flagella-associated protein 201.9e-7378.4Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        V NGHIKR  D DIQS VLEI G+ + +TYITCPADP  TLGIKLPFLV+I+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICTMP+R+D+G
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK
        WN IQ NL+DFTRRAYGTNY+ETLRVQ+HANCR+RR+YF+DRLYSE+ELP EFKLYLP Q K
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK

Q9VKV8 Cilia- and flagella-associated protein 205.0e-7479.38Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        V NGHIKR  D DIQS VLEIVG+ + +T+ITCPADP  TLGIKLPFLV+I+KN+KKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICTMP+R+DEG
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        WN IQ NL+DFTRRAYGTNYVETLRVQ+HANCR+RR+YF+DRLYSE+ELPPEFKL+LP Q
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ

Arabidopsis top hitse value%identityAlignment
AT3G12300.1 unknown protein2.4e-7985.62Show/hide
Query:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG
        V +GH+KR  D+DIQSNVLE+VGS IQSTYITCPAD +ATLGIKLPFLV++VK++KKYF+FEIQ+LDDKNVRRRFRASNFQA+TRVKPYICTMPL+MDEG
Subjt:  VSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEG

Query:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ
        WN IQLNLAD TRRAYGTNY ETLRVQ+HANCRLRRIYFADRLYSEEELPPEFKLYLP Q
Subjt:  WNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCTTTTTAGCAGTTTCTAATGGCCACATCAAACGGCCCCAGGATGAAGACATCCAATCAAATGTTCTTGAAATTGTTGGATCAAAAATACAGTCTACCTACATAACATG
CCCTGCGGACCCAGCTGCTACACTGGGTATAAAATTGCCATTCTTGGTTATAATCGTGAAGAATCTCAAGAAATATTTTACTTTTGAGATTCAAGTTCTGGATGATAAGA
ATGTCAGGAGACGCTTCCGGGCTTCTAATTTTCAAGCTATCACTAGAGTTAAGCCATATATCTGCACCATGCCGCTAAGGATGGATGAAGGTTGGAACCATATCCAGCTA
AATCTGGCTGACTTTACCAGGAGGGCATATGGTACGAACTATGTCGAGACATTGCGAGTTCAGGTACATGCAAACTGCCGCTTGAGGAGGATATATTTTGCGGACCGCTT
GTATTCAGAGGAGGAGCTTCCACCAGAGTTTAAGTTGTACCTCCCTACTCAGGTGAAG
mRNA sequenceShow/hide mRNA sequence
TCCTTTTTAGCAGTTTCTAATGGCCACATCAAACGGCCCCAGGATGAAGACATCCAATCAAATGTTCTTGAAATTGTTGGATCAAAAATACAGTCTACCTACATAACATG
CCCTGCGGACCCAGCTGCTACACTGGGTATAAAATTGCCATTCTTGGTTATAATCGTGAAGAATCTCAAGAAATATTTTACTTTTGAGATTCAAGTTCTGGATGATAAGA
ATGTCAGGAGACGCTTCCGGGCTTCTAATTTTCAAGCTATCACTAGAGTTAAGCCATATATCTGCACCATGCCGCTAAGGATGGATGAAGGTTGGAACCATATCCAGCTA
AATCTGGCTGACTTTACCAGGAGGGCATATGGTACGAACTATGTCGAGACATTGCGAGTTCAGGTACATGCAAACTGCCGCTTGAGGAGGATATATTTTGCGGACCGCTT
GTATTCAGAGGAGGAGCTTCCACCAGAGTTTAAGTTGTACCTCCCTACTCAGGTGAAG
Protein sequenceShow/hide protein sequence
SFLAVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGWNHIQL
NLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQVK