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MS004298 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004298
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase
Genome locationscaffold92:1607530..1607929
RNA-Seq ExpressionMS004298
SyntenyMS004298
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009561 - megagametogenesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR015712 - DNA-directed RNA polymerase, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573766.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3294.87Show/hide
Query:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        GKQVD P+ I SDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

KAG7012839.1 DNA-directed RNA polymerase III subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3294.87Show/hide
Query:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        GKQVD P+ I SDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

XP_022138958.1 DNA-directed RNA polymerase III subunit 2 [Momordica charantia]9.1e-3798.75Show/hide
Query:  RIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        +IGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  RIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

XP_022945802.1 DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucurbita moschata]1.4e-3294.87Show/hide
Query:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        GKQVD P+ I SDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

XP_023541760.1 DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo]1.4e-3294.87Show/hide
Query:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        GKQVD P+ I SDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

TrEMBL top hitse value%identityAlignment
A0A5A7UBS2 DNA-directed RNA polymerase subunit beta5.6e-3284.71Show/hide
Query:  PDKFCRIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        P+   +  KQ D  +PIDSDIDKQF+GLPIKSAVDKFQLLPEFLKVRGLV+QHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  PDKFCRIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

A0A5D3C055 DNA-directed RNA polymerase5.6e-3284.71Show/hide
Query:  PDKFCRIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        P+   +  KQ D  +PIDSDIDKQF+GLPIKSAVDKFQLLPEFLKVRGLV+QHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  PDKFCRIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

A0A6J1CEJ1 DNA-directed RNA polymerase subunit beta4.4e-3798.75Show/hide
Query:  RIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        +IGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  RIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

A0A6J1G1X8 DNA-directed RNA polymerase subunit beta6.6e-3394.87Show/hide
Query:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        GKQVD P+ I SDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

A0A6J1HQP0 DNA-directed RNA polymerase subunit beta1.5e-3293.59Show/hide
Query:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        GKQVD P+ I SDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRI+SSTDPSIYL
Subjt:  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

SwissProt top hitse value%identityAlignment
F4KD38 DNA-directed RNA polymerase III subunit 21.5e-2173.53Show/hide
Query:  DSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        D  IDK+ L  PIKS  DKFQL+PEFLKVRGLV+QHLDSFNYF+N  I KIVKAN RI S+ DPSIYL
Subjt:  DSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

P22276 DNA-directed RNA polymerase III subunit RPC21.0e-1466.07Show/hide
Query:  IKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        I +A DK+ LLP FLKV+GLV+QHLDSFNYFV+T++KKI+KAN  I S  DP  YL
Subjt:  IKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

P25167 DNA-directed RNA polymerase III subunit RPC22.3e-1453.12Show/hide
Query:  DKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        D +   +PIK   +K++L+P FL+V+GLV+QH+DSFN+F+N +IKKIVKAN+ + S  DP  YL
Subjt:  DKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

P59470 DNA-directed RNA polymerase III subunit RPC23.5e-1560Show/hide
Query:  LGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        L  PI +  +K++LLP FLKV+GLV+QH+DSFNYF+N EIKKI+KAN+++ S  DP  YL
Subjt:  LGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

Q9NW08 DNA-directed RNA polymerase III subunit RPC22.1e-1560Show/hide
Query:  LGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        L  PI +  +K++LLP FLKV+GLV+QH+DSFNYF+N EIKKI+KAN+++ S  DP  YL
Subjt:  LGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

Arabidopsis top hitse value%identityAlignment
AT5G45140.1 nuclear RNA polymerase C21.0e-2273.53Show/hide
Query:  DSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        D  IDK+ L  PIKS  DKFQL+PEFLKVRGLV+QHLDSFNYF+N  I KIVKAN RI S+ DPSIYL
Subjt:  DSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTGACAAATTTTGCAGGATTGGGAAGCAAGTCGACGGTCCTCATCCGATCGATTCGGACATTGACAAGCAGTTTCTTGGCCTTCCTATCAAGTCAGCCGTCGACAAGTT
CCAACTTCTTCCTGAATTTTTGAAGGTAAGAGGTCTGGTTCGACAACACTTGGATTCCTTTAACTACTTCGTGAATACAGAGATAAAGAAGATAGTCAAAGCAAACGATC
GCATTGAATCCAGCACTGATCCGAGTATTTATCTT
mRNA sequenceShow/hide mRNA sequence
CCTGACAAATTTTGCAGGATTGGGAAGCAAGTCGACGGTCCTCATCCGATCGATTCGGACATTGACAAGCAGTTTCTTGGCCTTCCTATCAAGTCAGCCGTCGACAAGTT
CCAACTTCTTCCTGAATTTTTGAAGGTAAGAGGTCTGGTTCGACAACACTTGGATTCCTTTAACTACTTCGTGAATACAGAGATAAAGAAGATAGTCAAAGCAAACGATC
GCATTGAATCCAGCACTGATCCGAGTATTTATCTT
Protein sequenceShow/hide protein sequence
PDKFCRIGKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLKVRGLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL