CuGenDBv2

Gene ID	MS004325
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ferredoxin-thioredoxin reductase, variable chain
Genome location	scaffold92:1847337..1847873
RNA-Seq Expression	MS004325
Synteny	MS004325
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7031885.1 hypothetical protein SDJN02_05926, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-68

83.24

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Query:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA
        MI +A+SIGVI    PAP AARPACSM VFSS D KSSYS S  SLSSVVVNPFNCS+ RGRR  SEVTV+SDSGT SSA AVSAATTSLS +ETDEAAA
Subjt:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA

Query:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        ARIGARVRV VPLKVYHVAKLPE D+ GMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHL+EEEFEY+
Subjt:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

XP_022138902.1 ferredoxin-thioredoxin reductase, variable chain [Momordica charantia]

2.0e-86

100

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Query:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA
        MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA
Subjt:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA

Query:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
Subjt:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

XP_022957590.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita moschata]

2.5e-68

83.24

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Query:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA
        MI +A+SIGVI    PAP AARPACSM VFSS D KSSYS S  SLSSVVVNPFNCSI RGRR  SEVTV+SDSGT SSA AVSAATTSLS +ETDEAAA
Subjt:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA

Query:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        ARIGARVRV VPLKVYHVAKLPE D+ GMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHL+EEEFEY+
Subjt:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

XP_023549490.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.0e-69

83.8

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Query:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA
        MI +A+SIGVI    PAP AARPACSM VFSS D KSSYS S  SLSSVVVNPFNCSIRRGRR  SEVTV+SDSGT SSA AVSAATTSLS +ETDEAAA
Subjt:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA

Query:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        ARIGARVRV VPLKVYHVAKLPE D+ GMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHL+EEEFEY+
Subjt:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

XP_038893043.1 ferredoxin-thioredoxin reductase, variable chain-like [Benincasa hispida]

8.5e-69

83.98

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Query:  MINIASSIGVISPSAP--APAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEA
        MI+IA+SIGVI   AP  A AAAR ACSM VFS AD KSSYS S  SLSSVVVNPFNCSIRRGRR+ SEV VRSDSGTS SATAVSAATTSLS EETDEA
Subjt:  MINIASSIGVISPSAP--APAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEA

Query:  AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        AAARIGARVRV VPLKVYHVAKLPE ++ GMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHL+EEEFEY+
Subjt:  AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

1.6e-68

82.87

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Query:  MINIASSIGVISPSAPAPA--AARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEA
        MI+IA+SIGVI   AP+ A  AAR ACSM VFS+AD KSS+S S  SLSS+VVNPFNCSIRRGRR+ SEV VRSDSGTSSSATAVSAATTSLS EETDEA
Subjt:  MINIASSIGVISPSAPAPA--AARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEA

Query:  AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        AAARIGARVRV VPLKVYHVAKLP+ ++ GMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHL+EEEFEY+
Subjt:  AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

A0A1S3BEI2 ferredoxin-thioredoxin reductase, variable chain

6.0e-68

80.66

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Query:  MINIASSIGVISPSAPAPA--AARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEA
        MI IA+SIG++ P  P+ A  AAR ACSM VFS++D +SS+S S  SLSSVVVNPFNCSIRRGRR+ SEV+VRSDSGTSSSATAVSAATTSLS EETDEA
Subjt:  MINIASSIGVISPSAPAPA--AARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEA

Query:  AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        AAARIGARVRV VPLKVYHVAKLPE ++ GMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KF+AHL+EEEFEY+
Subjt:  AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

A0A5D3D039 Sphingoid long-chain bases kinase 1

6.0e-68

80.66

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Query:  MINIASSIGVISPSAPAPA--AARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEA
        MI IA+SIG++ P  P+ A  AAR ACSM VFS++D +SS+S S  SLSSVVVNPFNCSIRRGRR+ SEV+VRSDSGTSSSATAVSAATTSLS EETDEA
Subjt:  MINIASSIGVISPSAPAPA--AARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEA

Query:  AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        AAARIGARVRV VPLKVYHVAKLPE ++ GMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KF+AHL+EEEFEY+
Subjt:  AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

A0A6J1CCI1 ferredoxin-thioredoxin reductase, variable chain

9.8e-87

100

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Query:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA
        MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA
Subjt:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA

Query:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
Subjt:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

A0A6J1H0Z6 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

1.2e-68

83.24

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Query:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA
        MI +A+SIGVI    PAP AARPACSM VFSS D KSSYS S  SLSSVVVNPFNCSI RGRR  SEVTV+SDSGT SSA AVSAATTSLS +ETDEAAA
Subjt:  MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAA

Query:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        ARIGARVRV VPLKVYHVAKLPE D+ GMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHL+EEEFEY+
Subjt:  ARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

4.2e-18

37.72

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Query:  SAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAAARIGARVRVTVPL
        ++ A A A     +P+F S +  S+   ST+   ++         R    IC EV ++SDS T       S++++    +E  +    ++G +V+V  PL
Subjt:  SAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAAARIGARVRVTVPL

Query:  KVYHVAKLPEVDIN-GMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        KVYHV KLPEV++   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK + HL+EEEFE I
Subjt:  KVYHVAKLPEVDIN-GMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

P80680 Ferredoxin-thioredoxin reductase, variable chain

1.1e-26

65.26

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Query:  ATTSLSAEETDEAAAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFLAHLREEEFEYI
        A+  ++AEE   AAA +IG RVRVT PL+VYHV K P++DI GMEGVVK YV VWKGKRV+AN P+KVEF + VEG+P PV+F AHLRE+EFE++
Subjt:  ATTSLSAEETDEAAAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFLAHLREEEFEYI

Q55781 Ferredoxin-thioredoxin reductase, variable chain

5.3e-05

39.24

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Query:  IGARVRVTVPLKVYH--VAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        +G RVRVT  + VYH    K    D+ GMEG V   +  W+G+ +SANLP  V+F          +F AH R +E   I
Subjt:  IGARVRVTVPLKVYH--VAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

5.8e-31

48.55

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Query:  AAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICS--------EVTVRSD----SGTSSSATAVSAATTSLSAEETDEAAAARIGAR
        AA RP  S     +A      S++  S SS +  P + S   GR  C+        + T+R D    S  S  A A  +++TSL  EE DE A  +IGAR
Subjt:  AAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICS--------EVTVRSD----SGTSSSATAVSAATTSLSAEETDEAAAARIGAR

Query:  VRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        VRVTVPLKVYHV ++PEV++ GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HL+E+EFE I
Subjt:  VRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

4.6e-28

46.99

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Query:  SSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGR------RICSEVTVRSDSGTSS--SATAVSAATTSLSAEETDE
        SS   +SP A A A  RP+    + +SA T ++   + ++L S +V P +    + +      R  S  T+R D    S  S  A +  ++S S+EE  E
Subjt:  SSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGR------RICSEVTVRSDSGTSS--SATAVSAATTSLSAEETDE

Query:  A-AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI
        A A A+IG+RVRVT PLKVYHV ++PEVD+ GMEG +KDYV VWKGKR+SANLPYK+EF   +EGR  VKF++HL+E+EFE+I
Subjt:  A-AAARIGARVRVTVPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

Sequences

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CDS sequence

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ATGATTAATATCGCGAGCAGTATCGGCGTGATATCCCCGTCGGCGCCGGCGCCGGCGGCCGCTCGTCCCGCCTGTTCTATGCCGGTATTCTCAAGTGCTGATACCAAATC
GTCCTATTCCTTGTCCACTGTTTCTTTGTCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATCAGAAGAGGGAGAAGAATCTGTAGCGAGGTTACAGTCAGATCAGATT
CCGGAACTTCGTCTTCAGCTACGGCTGTTTCGGCGGCGACGACGTCGTTGTCGGCGGAGGAGACGGACGAAGCGGCCGCCGCTAGAATTGGAGCCAGAGTTAGGGTTACG
GTGCCATTGAAGGTTTATCATGTAGCTAAGTTACCGGAGGTGGATATTAATGGGATGGAAGGAGTGGTGAAGGACTACGTGCGCGTTTGGAAGGGGAAGCGCGTGTCTGC
TAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCGGTTGAAGGCCGTCCGCCGGTGAAGTTCTTAGCGCATCTCAGGGAGGAAGAATTTGAATACATT

mRNA sequence

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Protein sequence

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MINIASSIGVISPSAPAPAAARPACSMPVFSSADTKSSYSLSTVSLSSVVVNPFNCSIRRGRRICSEVTVRSDSGTSSSATAVSAATTSLSAEETDEAAAARIGARVRVT
VPLKVYHVAKLPEVDINGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFLAHLREEEFEYI

MS004325 (gene) of Bitter gourd (TR) v1 genome