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MS004348 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004348
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 18
Genome locationscaffold92:2078781..2078888
RNA-Seq ExpressionMS004348
SyntenyMS004348
Gene Ontology termsGO:0000070 - mitotic sister chromatid segregation (biological process)
GO:1902440 - protein localization to mitotic spindle pole body (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005815 - microtubule organizing center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0072686 - mitotic spindle (cellular component)
GO:1990811 - MWP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR001650 - Helicase, C-terminal
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599970.1 DEAD-box ATP-dependent RNA helicase 18, partial [Cucurbita argyrosperma subsp. sororia]9.3e-0788.89Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
KAG7030648.1 DEAD-box ATP-dependent RNA helicase 18, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-0788.89Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
KAG7030649.1 DEAD-box ATP-dependent RNA helicase 18 [Cucurbita argyrosperma subsp. argyrosperma]9.3e-0788.89Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
XP_022941834.1 DEAD-box ATP-dependent RNA helicase 18 [Cucurbita moschata]9.3e-0788.89Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
XP_022995332.1 DEAD-box ATP-dependent RNA helicase 18 [Cucurbita maxima]9.3e-0788.89Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
TrEMBL top hitse value%identityAlignment
A0A0A0KSG4 Uncharacterized protein1.0e-0686.11Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
A0A5D3D6C0 DEAD-box ATP-dependent RNA helicase 181.0e-0686.11Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
A0A6J1D0N8 DEAD-box ATP-dependent RNA helicase 181.0e-0686.11Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
A0A6J1FPL3 DEAD-box ATP-dependent RNA helicase 184.5e-0788.89Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
A0A6J1JYJ7 DEAD-box ATP-dependent RNA helicase 184.5e-0788.89Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
SwissProt top hitse value%identityAlignment
Q54S03 Probable ATP-dependent RNA helicase ddx181.0e-0352.78Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        R      FV+   G+L+CTDVAA GLDIP VD ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
Q761Z9 DEAD-box ATP-dependent RNA helicase 189.6e-0772.22Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        RE+ALASF +LSSG+L+CTDVAA GLDIP VD ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
Q8GXD6 DEAD-box ATP-dependent RNA helicase 494.3e-0772.22Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        R+ ALASF   SSGVLLCTDVAA GLDIPG+D ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
Q9FLB0 DEAD-box ATP-dependent RNA helicase 187.4e-0769.44Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        R++ALASF   SSG LLCTDVAA GLDIPG+D ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
Q9FVV4 DEAD-box ATP-dependent RNA helicase 556.2e-0677.42Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGV
        R+ ALASF   SSGVLLCTDVAA GLDIPG+
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGV
Arabidopsis top hitse value%identityAlignment
AT1G71280.1 DEA(D/H)-box RNA helicase family protein4.4e-0777.42Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGV
        R+ ALASF   SSGVLLCTDVAA GLDIPG+
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGV
AT1G71370.1 DEA(D/H)-box RNA helicase family protein3.1e-0872.22Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        R+ ALASF   SSGVLLCTDVAA GLDIPG+D ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein9.3e-0552.78Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        R +    F+    G+LLCTDVAA GLDIP VD ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein5.2e-0869.44Show/hide
Query:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ
        R++ALASF   SSG LLCTDVAA GLDIPG+D ++Q
Subjt:  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGGAGGAAGCACTAGCCTCATTTGTATCCCTCTCAAGTGGTGTCCTTCTATGCACAGATGTCGCAGCCTCTGGACTCGACATCCCTGGCGTCGATGGTATGCTTCAG
mRNA sequenceShow/hide mRNA sequence
AGGGAGGAAGCACTAGCCTCATTTGTATCCCTCTCAAGTGGTGTCCTTCTATGCACAGATGTCGCAGCCTCTGGACTCGACATCCCTGGCGTCGATGGTATGCTTCAG
Protein sequenceShow/hide protein sequence
REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ