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MS004349 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004349
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionthioredoxin-like protein YLS8
Genome locationscaffold92:2079493..2079732
RNA-Seq ExpressionMS004349
SyntenyMS004349
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0750948.1 hypothetical protein [Gossypium gossypioides]3.9e-2987.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

NP_196446.1 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]3.9e-2987.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

XP_004143618.1 thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus]3.9e-2987.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

XP_022139325.1 thioredoxin-like protein YLS8 [Momordica charantia]2.8e-3597.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MDGVLASVAETIKNFAVIYLVDI+EVPDFNAMYELYD STVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

XP_040967487.1 thioredoxin-like protein YLS8 [Gossypium hirsutum]3.9e-2987.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

TrEMBL top hitse value%identityAlignment
A0A6J1CC08 thioredoxin-like protein YLS81.3e-3597.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MDGVLASVAETIKNFAVIYLVDI+EVPDFNAMYELYD STVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

A0A6J1I6E9 thioredoxin-like protein YLS81.9e-2987.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

A0A6P4D2R7 thioredoxin-like protein YLS8 isoform X11.9e-2987.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

A0A7I8L052 Hypothetical protein1.9e-2987.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

S4U0X2 YLS81.9e-2987.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A3.4e-2876.25Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VL S+AE +KNFAVIYLVDI EVPDFN MYELYDP TVMFFFRNKHIM +  G GNN+KINWA++DKQE +DIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

P83877 Thioredoxin-like protein 4A3.4e-2876.25Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VL S+AE +KNFAVIYLVDI EVPDFN MYELYDP TVMFFFRNKHIM +  G GNN+KINWA++DKQE +DIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

P87215 Mitosis protein dim11.9e-2367.09Show/hide
Query:  DGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        D VL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+M +  G GNN+KINW L+DKQE IDIIE +
Subjt:  DGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

Q553S5 Thioredoxin-like protein 4A homolog1.5e-2367.09Show/hide
Query:  DGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        D +LAS+AE +KN AVIY+VDI EVPD N+MYELYD    MFF+RNKHIM +  G GNN+KINWAL +KQ+ IDIIE V
Subjt:  DGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

Q9FE62 Thioredoxin-like protein YLS85.1e-3287.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

Arabidopsis top hitse value%identityAlignment
AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP3.6e-3387.5Show/hide
Query:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYDPSTVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGTGTTGGCCTCAGTTGCCGAGACGATTAAGAACTTTGCAGTAATATATCTTGTCGATATCATGGAGGTTCCTGATTTCAACGCAATGTACGAGCTGTATGA
TCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGAGATTGATCTTTGGTGCTGGAAACAACGATAAGATAAACTGGGCACTCAAGGATAAGCAGGAGTTCA
TTGATATCATTGAAGACGTG
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAGTGTTGGCCTCAGTTGCCGAGACGATTAAGAACTTTGCAGTAATATATCTTGTCGATATCATGGAGGTTCCTGATTTCAACGCAATGTACGAGCTGTATGA
TCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGAGATTGATCTTTGGTGCTGGAAACAACGATAAGATAAACTGGGCACTCAAGGATAAGCAGGAGTTCA
TTGATATCATTGAAGACGTG
Protein sequenceShow/hide protein sequence
MDGVLASVAETIKNFAVIYLVDIMEVPDFNAMYELYDPSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV