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MS004358 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004358
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLow temperature and salt responsive protein family
Genome locationscaffold92:2215439..2215726
RNA-Seq ExpressionMS004358
SyntenyMS004358
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000612 - Proteolipid membrane potential modulator


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030774.1 Hydrophobic protein RCI2A, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-2188.71Show/hide
Query:  VLASTQRERIMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        + +   RERIMGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  VLASTQRERIMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

XP_004143609.2 uncharacterized protein LOC101203086 [Cucumis sativus]7.6e-2090.16Show/hide
Query:  TQRER-IMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        T++E+  MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  TQRER-IMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

XP_022139042.1 low temperature-induced protein lt101.2 [Momordica charantia]5.8e-20100Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

XP_023639589.1 uncharacterized protein LOC111830941 [Capsella rubella]7.6e-2085.94Show/hide
Query:  VLASTQRERIMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        VL    ++  MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  VLASTQRERIMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

XP_026412058.1 low temperature-induced protein lt101.2 [Papaver somniferum]7.6e-2098.15Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

TrEMBL top hitse value%identityAlignment
A0A178W1U1 (thale cress) hypothetical protein6.3e-2098.15Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

A0A6J1CCW8 low temperature-induced protein lt101.22.8e-20100Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

A0A6J1FUC5 low temperature-induced protein lt101.26.3e-2098.15Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

A0A6J1KKG3 low temperature-induced protein lt101.26.3e-2098.15Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

Q941D7 At2g38901/At2g389016.3e-2098.15Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

SwissProt top hitse value%identityAlignment
P68178 Salt stress-induced hydrophobic peptide ESI31.3e-1784.91Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
        MGS T +E+ILAI+LPPVGVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV

P68179 Low temperature-induced protein lt101.11.3e-1784.91Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
        MGS T +E+ILAI+LPPVGVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV

Q9ARD5 Low temperature-induced protein lt101.25.7e-1883.02Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
        M S TF+E+ILAI+LPPVGVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVLV
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV

Q9ZNQ7 Hydrophobic protein RCI2A4.3e-1882.69Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        M + TFV+II+AILLPP+GVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

Q9ZNS6 Hydrophobic protein RCI2B9.1e-1669.23Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        M + TFVEIILAI+LPP+GVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

Arabidopsis top hitse value%identityAlignment
AT1G57550.1 Low temperature and salt responsive protein family1.8e-1469.23Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGS  F+E++ AI +PPVGVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

AT2G38905.1 Low temperature and salt responsive protein family1.2e-2398.15Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
        MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

AT3G05880.1 Low temperature and salt responsive protein family3.1e-1982.69Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        M + TFV+II+AILLPP+GVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

AT3G05890.1 Low temperature and salt responsive protein family6.4e-1769.23Show/hide
Query:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        M + TFVEIILAI+LPP+GVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Subjt:  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

AT4G30650.1 Low temperature and salt responsive protein family1.6e-1272.55Show/hide
Query:  ETFVEIILAILLPPVGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV
        E F EI++AILLPP+GV L+ G C VEF ICL+LTILGYIPGIIYA+YV+V
Subjt:  ETFVEIILAILLPPVGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTTTGGCGTCCACACAGAGAGAGAGAATCATGGGTTCTGAGACTTTTGTGGAGATCATACTGGCAATTCTTCTACCACCTGTTGGAGTTTTCCTTCGCTATGGCTGTGG
GGTAGAGTTCTGGATCTGTTTGTTGCTGACCATATTGGGATACATACCTGGAATCATATATGCAATATATGTGCTAGTTGGA
mRNA sequenceShow/hide mRNA sequence
GTTTTGGCGTCCACACAGAGAGAGAGAATCATGGGTTCTGAGACTTTTGTGGAGATCATACTGGCAATTCTTCTACCACCTGTTGGAGTTTTCCTTCGCTATGGCTGTGG
GGTAGAGTTCTGGATCTGTTTGTTGCTGACCATATTGGGATACATACCTGGAATCATATATGCAATATATGTGCTAGTTGGA
Protein sequenceShow/hide protein sequence
VLASTQRERIMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG