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MS004384 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004384
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold262:22414..22647
RNA-Seq ExpressionMS004384
SyntenyMS004384
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3465749.1 reverse transcriptase [Gossypium australe]5.6e-1759.72Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKV
        LL P+S  EV+  +K M  IKAPGPDGFPA+F+QK+WH VG + +  CL +LNEGK     N TNIVLIPKV
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKV
KAA3472190.1 reverse transcriptase [Gossypium australe]3.3e-1759.46Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        LL P+S  EV +A+K M   KAPGPDGFPAVF+QK+WH VG + +  CL +LNEG+     N TNIVLIPKV K
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
KAA3472829.1 reverse transcriptase [Gossypium australe]9.6e-1758.11Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        L  P+   EV  A+K M  IKAPGPDGFPA+F+QKFWH VG + +  CL +LNEG+  +  N TNIVLIPKV+K
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
KAA3479651.1 reverse transcriptase [Gossypium australe]2.8e-1656.76Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        L  P+   EV +A+K M   KAPGPDGFPAVF+QK+WH VG + +  CL +LNEG+     N TNIVLIPKV K
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.0e-1858.11Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        LL PY+ +E+E AI++MF  KA GPDGFPA+FYQ +WH VGPKT+ +CL  LN G   K WN T I LIPK+ +
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
TrEMBL top hitse value%identityAlignment
A0A5B6V9D8 Reverse transcriptase2.7e-1759.72Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKV
        LL P+S  EV+  +K M  IKAPGPDGFPA+F+QK+WH VG + +  CL +LNEGK     N TNIVLIPKV
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKV
A0A5B6VSM9 Reverse transcriptase1.6e-1759.46Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        LL P+S  EV +A+K M   KAPGPDGFPAVF+QK+WH VG + +  CL +LNEG+     N TNIVLIPKV K
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
A0A5B6VTM0 Reverse transcriptase4.7e-1758.11Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        L  P+   EV  A+K M  IKAPGPDGFPA+F+QKFWH VG + +  CL +LNEG+  +  N TNIVLIPKV+K
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
A0A5B6WD12 Reverse transcriptase1.4e-1656.76Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        L  P+   EV +A+K M   KAPGPDGFPAVF+QK+WH VG + +  CL +LNEG+     N TNIVLIPKV K
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
A0A6J1DX30 uncharacterized protein LOC1110248745.0e-1958.11Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        LL PY+ +E+E AI++MF  KA GPDGFPA+FYQ +WH VGPKT+ +CL  LN G   K WN T I LIPK+ +
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein7.9e-0636.62Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPK
        L  P +  E+   I  + T K+PGPDGF A FYQ++   + P  +     I  EG     + E +I+LIPK
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPK
P11369 LINE-1 retrotransposable element ORF2 protein3.6e-0640.54Show/hide
Query:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
        L  P S +E+E  I  + T K+PGPDGF A FYQ F   + P       +I  EG     + E  I LIPK  K
Subjt:  LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSK
Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein2.3e-0839.44Show/hide
Query:  SSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSKIN
        S +E+  A+  M   KAPGPD F A F+ + W  V   TI++  E    G   K +N T I LIPKV+ ++
Subjt:  SSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSKIN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGCTTGAGCCTTATAGTTCTCAGGAGGTAGAAAGAGCAATTAAAGAGATGTTTACTATAAAAGCTCCTGGACCGGACGGTTTTCCTGCCGTGTTCTATCAGAAATTCTG
GCATACGGTGGGTCCAAAAACTATATCTAGTTGCTTGGAGATTCTTAATGAAGGAAAGAGTACGAAGGGATGGAATGAAACTAATATAGTGCTCATCCCCAAGGTGAGTA
AAATTAATATCCAT
mRNA sequenceShow/hide mRNA sequence
CTGCTTGAGCCTTATAGTTCTCAGGAGGTAGAAAGAGCAATTAAAGAGATGTTTACTATAAAAGCTCCTGGACCGGACGGTTTTCCTGCCGTGTTCTATCAGAAATTCTG
GCATACGGTGGGTCCAAAAACTATATCTAGTTGCTTGGAGATTCTTAATGAAGGAAAGAGTACGAAGGGATGGAATGAAACTAATATAGTGCTCATCCCCAAGGTGAGTA
AAATTAATATCCAT
Protein sequenceShow/hide protein sequence
LLEPYSSQEVERAIKEMFTIKAPGPDGFPAVFYQKFWHTVGPKTISSCLEILNEGKSTKGWNETNIVLIPKVSKINIH