CuGenDBv2

Gene ID	MS004386
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold262:111504..111767
RNA-Seq Expression	MS004386
Synteny	MS004386
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

2.2e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

2.2e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

YP_009752370.1 Ycf2 protein [Bryonia marmorata]

2.2e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

YP_009752793.1 Ycf2 protein [Cyclantheropsis parviflora]

1.7e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

2.2e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

1.1e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

A0A6H0ESM3 Protein Ycf2

1.1e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

A0A6H0ET42 Protein Ycf2

1.1e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

A0A6H0ET43 Protein Ycf2

8.0e-42

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

A0A6M3RUH1 Protein Ycf2

1.1e-41

96.59

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNCS+D ISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCS GSVVQDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

SwissProt top hits

e value

%identity

Alignment

A0ZZ78 Protein Ycf2

3.5e-42

93.18

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAV QNVLLSNC LD ISIYMKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCS GSV QDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

B1A978 Protein Ycf2

2.0e-42

93.18

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNC +D ISIYMKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCS GSV QDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

Q09MB4 Protein Ycf2

2.0e-42

93.18

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNC +D ISIYMKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCS GSV QDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

Q0ZIV6 Protein Ycf2

2.0e-42

93.18

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNC +D ISIYMKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCS GSV QDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

Q49KT6 Protein Ycf2

2.7e-42

92.05

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Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVLLSNC +D ISIYMKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCS GS+ QDLWSLPGPDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

8.0e-42

89.77

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVL+SNC +D ISIYMKKKSCNEG SYLYKWYFELGTSMKK TILLYLLSCS GSV QDLWSLP PDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

8.0e-42

89.77

Show/hide

Query:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN
        SVQDHGILFYQIGRAVAQNVL+SNC +D ISIYMKKKSCNEG SYLYKWYFELGTSMKK TILLYLLSCS GSV QDLWSLP PDEKN
Subjt:  SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCTTGGATCATATATCTATCTATATGAAGAAGAA
ATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACAATACTTCTTTATCTTTTGAGTTGTTCTGTAGGATCGG
TCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAAT

mRNA sequence

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Protein sequence

Show/hide protein sequence

SVQDHGILFYQIGRAVAQNVLLSNCSLDHISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSVGSVVQDLWSLPGPDEKN

MS004386 (gene) of Bitter gourd (TR) v1 genome