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MS004390 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004390
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2
Genome locationscaffold262:168481..168588
RNA-Seq ExpressionMS004390
SyntenyMS004390
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QIT04093.1 Ycf2 protein [Luffa aegyptiaca]1.1e-1097.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
QIT04176.1 Ycf2 protein [Sechium edule]6.2e-1197.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
YP_009751949.1 Ycf2 protein [Cyclanthera pedata]6.2e-1197.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
YP_009752370.1 Ycf2 protein [Bryonia marmorata]1.1e-1097.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
YP_009945458.1 Ycf2 [Sechium edule]6.2e-1197.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
TrEMBL top hitse value%identityAlignment
A0A343F2F1 Protein Ycf25.1e-1197.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
A0A6H0EQH0 Protein Ycf23.0e-1197.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
A0A6H0ESN1 Protein Ycf23.0e-1197.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
A0A6H0ET42 Protein Ycf25.1e-1197.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
A0A6H0EV63 Protein Ycf25.1e-1197.22Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHFGLLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
SwissProt top hitse value%identityAlignment
A6MMG6 Protein Ycf29.9e-1291.67Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHF LLIHRQRWLRTNSSLSN  FRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
B1A978 Protein Ycf21.2e-1294.44Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHF LLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
Q09MB4 Protein Ycf21.2e-1294.44Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHF LLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
Q49KT6 Protein Ycf21.2e-1294.44Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHF LLIHRQRWLRTNSSLSN FFRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
Q7Y667 Protein Ycf29.9e-1291.67Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
        FIKNTQEKHF LLIHRQRWLRTNSSLSN  FRSNTP
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core4.6e-1291.43Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNT
        FIKNTQEKHF LLI RQRWLRTNSSLSN FFRSNT
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNT
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core4.6e-1291.43Show/hide
Query:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNT
        FIKNTQEKHF LLI RQRWLRTNSSLSN FFRSNT
Subjt:  FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTATCAAGAATACGCAAGAAAAGCACTTCGGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGAATTTTTCCGTTCTAATACTCCC
mRNA sequenceShow/hide mRNA sequence
TTTATCAAGAATACGCAAGAAAAGCACTTCGGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGAATTTTTCCGTTCTAATACTCCC
Protein sequenceShow/hide protein sequence
FIKNTQEKHFGLLIHRQRWLRTNSSLSNEFFRSNTP