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MS004391 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004391
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold262:183707..184114
RNA-Seq ExpressionMS004391
SyntenyMS004391
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO57964.1 reverse transcriptase [Corchorus capsularis]7.3e-1238.28Show/hide
Query:  WNPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNW
        W PPS G  KLN+DAA+  R   +GLG ++R S G V+      V + L  L AE+  IL G   A+T     ++ ESDSL AI  +     +L +  + 
Subjt:  WNPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNW

Query:  VLEARALASSFDSIFFGHVSRHCTKPAH
        + + + L S FDS  F HV R   K AH
Subjt:  VLEARALASSFDSIFFGHVSRHCTKPAH

OMO91484.1 reverse transcriptase [Corchorus capsularis]2.8e-1136.84Show/hide
Query:  NPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWV
        +PP  G +K+N DA F  ++  +GLG ++RG +G VMV+ S  + +   PL AE+  +L  F+ A     T   +ESD L+AI+ IK+      D  N +
Subjt:  NPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWV

Query:  LEARALASSFDSIFFGHVSRHCTKPAHLFGTKR
         E R LA  FD   F HV+R     AH     R
Subjt:  LEARALASSFDSIFFGHVSRHCTKPAHLFGTKR

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]3.2e-1547.92Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDEL
        W PP    +K+N+DAA R +S+GLG ++R   G ++VAKS+++P  L PL AEI+GILE  K A +   TRL VESD   AIRL++  + ++G+EL
Subjt:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDEL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.5e-2854.76Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVL
        W P S+  LKLNTDAA R +S+  G ++R S  +++ A S+ VP+ L PLLAEI+ ILEG K+A     T LEVESDSLLAI+LI+N+IHT GDE NWV+
Subjt:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVL

Query:  EARALASSFDSIFFGHVSRHCTKPAH
        E +AL   F  I F H SR C + AH
Subjt:  EARALASSFDSIFFGHVSRHCTKPAH

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]3.9e-1340.31Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVL
        W PP  G +K+NTDAA  +  SG+G LLR    A +V   V       PLLA+I  I EG   A  +   R+ VE+DSL A+ LI +K    G+ ++WV 
Subjt:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVL

Query:  EARALASSFDSIFFGHVSRHCTKPAHLFG
        + RA A  F  I F HV R     A+  G
Subjt:  EARALASSFDSIFFGHVSRHCTKPAHLFG

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase1.1e-1038.28Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSS--SGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNW
        W  PS G  K+NTDA+F  S+  +GLG ++R  +G ++V+ +  + +    L AE+  IL GF+ A     TR  +ESDSLLAI  I  K   L +    
Subjt:  WNPPSTGYLKLNTDAAFRDSS--SGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNW

Query:  VLEARALASSFDSIFFGHVSRHCTKPAH
        + E R +AS FD   F  V+R     AH
Subjt:  VLEARALASSFDSIFFGHVSRHCTKPAH

A0A1R3J9H7 Reverse transcriptase1.3e-1136.84Show/hide
Query:  NPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWV
        +PP  G +K+N DA F  ++  +GLG ++RG +G VMV+ S  + +   PL AE+  +L  F+ A     T   +ESD L+AI+ IK+      D  N +
Subjt:  NPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWV

Query:  LEARALASSFDSIFFGHVSRHCTKPAHLFGTKR
         E R LA  FD   F HV+R     AH     R
Subjt:  LEARALASSFDSIFFGHVSRHCTKPAHLFGTKR

A0A6J1BQ49 uncharacterized protein LOC1110047861.5e-1547.92Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDEL
        W PP    +K+N+DAA R +S+GLG ++R   G ++VAKS+++P  L PL AEI+GILE  K A +   TRL VESD   AIRL++  + ++G+EL
Subjt:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDEL

A0A6J1DX30 uncharacterized protein LOC1110248741.2e-2854.76Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVL
        W P S+  LKLNTDAA R +S+  G ++R S  +++ A S+ VP+ L PLLAEI+ ILEG K+A     T LEVESDSLLAI+LI+N+IHT GDE NWV+
Subjt:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVL

Query:  EARALASSFDSIFFGHVSRHCTKPAH
        E +AL   F  I F H SR C + AH
Subjt:  EARALASSFDSIFFGHVSRHCTKPAH

A0A6J1DZK3 uncharacterized protein LOC1110249681.9e-1340.31Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVL
        W PP  G +K+NTDAA  +  SG+G LLR    A +V   V       PLLA+I  I EG   A  +   R+ VE+DSL A+ LI +K    G+ ++WV 
Subjt:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVL

Query:  EARALASSFDSIFFGHVSRHCTKPAHLFG
        + RA A  F  I F HV R     A+  G
Subjt:  EARALASSFDSIFFGHVSRHCTKPAHLFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAACCCTCCAAGTACAGGCTATCTGAAGCTTAACACTGACGCTGCATTTAGGGATTCATCTTCGGGCTTGGGGTTTCTTTTACGGGGTTCTGATGGAGCTGTGATGGT
GGCCAAATCCGTGTATGTTCCTTATTCATTACCTCCTCTTCTGGCTGAAATTAAAGGGATTCTTGAAGGATTTAAGTATGCCCAAACTATTTACTGTACCCGGCTTGAAG
TGGAATCAGACTCCCTCTTGGCAATCCGATTGATTAAGAATAAAATCCACACCCTTGGAGATGAGCTTAATTGGGTGTTGGAAGCAAGAGCGCTTGCTTCCTCTTTCGAT
TCCATCTTTTTCGGGCATGTCTCTCGGCACTGCACCAAACCTGCTCATCTTTTTGGCACAAAGAGGGGTTTTGCTTAC
mRNA sequenceShow/hide mRNA sequence
TGGAACCCTCCAAGTACAGGCTATCTGAAGCTTAACACTGACGCTGCATTTAGGGATTCATCTTCGGGCTTGGGGTTTCTTTTACGGGGTTCTGATGGAGCTGTGATGGT
GGCCAAATCCGTGTATGTTCCTTATTCATTACCTCCTCTTCTGGCTGAAATTAAAGGGATTCTTGAAGGATTTAAGTATGCCCAAACTATTTACTGTACCCGGCTTGAAG
TGGAATCAGACTCCCTCTTGGCAATCCGATTGATTAAGAATAAAATCCACACCCTTGGAGATGAGCTTAATTGGGTGTTGGAAGCAAGAGCGCTTGCTTCCTCTTTCGAT
TCCATCTTTTTCGGGCATGTCTCTCGGCACTGCACCAAACCTGCTCATCTTTTTGGCACAAAGAGGGGTTTTGCTTAC
Protein sequenceShow/hide protein sequence
WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLEVESDSLLAIRLIKNKIHTLGDELNWVLEARALASSFD
SIFFGHVSRHCTKPAHLFGTKRGFAY