; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004393 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004393
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold262:189120..189430
RNA-Seq ExpressionMS004393
SyntenyMS004393
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032390.1 uncharacterized protein E6C27_scaffold219G002650 [Cucumis melo var. makuwa]8.8e-1041.67Show/hide
Query:  RSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGKFKAL
        +SLN  E+LQ ++P+ +LSP+  CLCL   + +DHLF+H  F +KGR      F +  C PK+++DW+++   G  F GK K L
Subjt:  RSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGKFKAL

KAA0056469.1 uncharacterized protein E6C27_scaffold186G002430 [Cucumis melo var. makuwa]2.7e-1146.51Show/hide
Query:  RSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGKFKALWD
        RSLNTHE+LQ ++P R+LS S CCLCL   E +DHLF+H   A+KG    F  F +   LP++++DWM+E   G  F  + K+  D
Subjt:  RSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGKFKALWD

RVW25440.1 Preprotein translocase subunit SECY, chloroplastic [Vitis vinifera]2.0e-0936.54Show/hide
Query:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFL-IAICLPKRVEDWMIECCLGWPFKGKFKALWDCTFKALLWDLW
        VA   +NT+++LQ+R P ++L P  C LC G  E+IDHLF+H        H  F  + +A   P+ +ED ++    G     + K LW  ++  LLW +W
Subjt:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFL-IAICLPKRVEDWMIECCLGWPFKGKFKALWDCTFKALLWDLW

Query:  LERN
         ERN
Subjt:  LERN

RVW44660.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]7.5e-0937.5Show/hide
Query:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFLIAICLPKR-VEDWMIECCLGWPFKGKFKALWDCTFKALLWDLW
        VA   +NT+++LQ+R P + L P  C LC G  E+IDHLF+H        H  F  +  I +P R +ED ++    G     + K LW  T   L+W +W
Subjt:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFLIAICLPKR-VEDWMIECCLGWPFKGKFKALWDCTFKALLWDLW

Query:  LERN
         ERN
Subjt:  LERN

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]8.8e-1046.99Show/hide
Query:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGK
        +A RSLN   +LQ ++P+ +LSPS C LCL  AE  DHLF+H  FA KG +  F  F +  CLPK+++D M +   G  F GK
Subjt:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGK

TrEMBL top hitse value%identityAlignment
A0A438CQF2 Preprotein translocase subunit SECY, chloroplastic9.5e-1036.54Show/hide
Query:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFL-IAICLPKRVEDWMIECCLGWPFKGKFKALWDCTFKALLWDLW
        VA   +NT+++LQ+R P ++L P  C LC G  E+IDHLF+H        H  F  + +A   P+ +ED ++    G     + K LW  ++  LLW +W
Subjt:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFL-IAICLPKRVEDWMIECCLGWPFKGKFKALWDCTFKALLWDLW

Query:  LERN
         ERN
Subjt:  LERN

A0A438D8E5 Putative ribonuclease H protein3.6e-0936.54Show/hide
Query:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFLIAICLPKR-VEDWMIECCLGWPFKGKFKALWDCTFKALLWDLW
        VA   +NT+++LQ+R P + L P  C LC G  E+IDHLF+H        H  F  +  I +P R +ED ++    G     + K LW      L+W +W
Subjt:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFLIAICLPKR-VEDWMIECCLGWPFKGKFKALWDCTFKALLWDLW

Query:  LERN
         ERN
Subjt:  LERN

A0A5A7SNM9 Uncharacterized protein4.3e-1041.67Show/hide
Query:  RSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGKFKAL
        +SLN  E+LQ ++P+ +LSP+  CLCL   + +DHLF+H  F +KGR      F +  C PK+++DW+++   G  F GK K L
Subjt:  RSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGKFKAL

A0A5D3E019 zf-RVT domain-containing protein1.3e-1146.51Show/hide
Query:  RSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGKFKALWD
        RSLNTHE+LQ ++P R+LS S CCLCL   E +DHLF+H   A+KG    F  F +   LP++++DWM+E   G  F  + K+  D
Subjt:  RSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGKFKALWD

A0A5D3E632 Protein FAM91A14.3e-1046.99Show/hide
Query:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGK
        +A RSLN   +LQ ++P+ +LSPS C LCL  AE  DHLF+H  FA KG +  F  F +  CLPK+++D M +   G  F GK
Subjt:  VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFK-FLIAICLPKRVEDWMIECCLGWPFKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGCCCTTAGGTCCTTGAATACGCATGAGAGATTGCAAGTTAGATACCCGGACCGGACTCTCTCCCCCTCGGCTTGCTGTCTTTGTTTGGGGGCAGCTGAAAACATAGA
TCATCTTTTCATTCACGGTCTCTTTGCTGCAAAAGGGCGGCACTTTTATTTCAAGTTTTTGATTGCTATATGCTTGCCTAAACGTGTTGAAGATTGGATGATTGAGTGTT
GCCTTGGTTGGCCCTTTAAAGGAAAGTTCAAAGCGTTATGGGATTGCACCTTTAAAGCTCTTTTGTGGGACCTATGGCTAGAAAGAAAT
mRNA sequenceShow/hide mRNA sequence
GTTGCCCTTAGGTCCTTGAATACGCATGAGAGATTGCAAGTTAGATACCCGGACCGGACTCTCTCCCCCTCGGCTTGCTGTCTTTGTTTGGGGGCAGCTGAAAACATAGA
TCATCTTTTCATTCACGGTCTCTTTGCTGCAAAAGGGCGGCACTTTTATTTCAAGTTTTTGATTGCTATATGCTTGCCTAAACGTGTTGAAGATTGGATGATTGAGTGTT
GCCTTGGTTGGCCCTTTAAAGGAAAGTTCAAAGCGTTATGGGATTGCACCTTTAAAGCTCTTTTGTGGGACCTATGGCTAGAAAGAAAT
Protein sequenceShow/hide protein sequence
VALRSLNTHERLQVRYPDRTLSPSACCLCLGAAENIDHLFIHGLFAAKGRHFYFKFLIAICLPKRVEDWMIECCLGWPFKGKFKALWDCTFKALLWDLWLERN