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MS004394 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004394
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold262:189638..189889
RNA-Seq ExpressionMS004394
SyntenyMS004394
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-0632.14Show/hide
Query:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW
        PW  I  N   F+    +      +I F   NW  E  L+  +  +FA+S+++  SI + WN+  N W++ F R L +REL+ W
Subjt:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-0633.33Show/hide
Query:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW
        PW  I  N   F+    +      +I F   NW  E  L+  +  +FA+SL++  SI + WN+  N W++ F R L +REL+ W
Subjt:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW

TYK05808.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0632.14Show/hide
Query:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW
        PW  I  N   F+    +    + +I F   NW  E  L+  +  +FA+S+++  SI + WN+  N W++ F R L +REL+ W
Subjt:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW

XP_022149391.1 uncharacterized protein LOC111017819 [Momordica charantia]7.2e-1048.44Show/hide
Query:  GQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW
        G+  RIRF LD W  E+ LA+ F D++A+SL +   + +CW+     WDLGF RGLF+REL  W
Subjt:  GQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW

XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]4.3e-1548.72Show/hide
Query:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFE
        PWFDIAKN + FQ+ + FKA Q  R+ F +D W    PL   F D+FA+SL Q   + +CWN E   WDL   RGLF+
Subjt:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFE

TrEMBL top hitse value%identityAlignment
A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein1.4e-0633.33Show/hide
Query:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW
        PW  I  N   F+    +      +I F   NW  E  L+  +  +FA+SL++  SI + WN+  N W++ F R L +REL+ W
Subjt:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW

A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein1.4e-0632.14Show/hide
Query:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW
        PW  I  N   F+    +      +I F   NW  E  L+  +  +FA+S+++  SI + WN+  N W++ F R L +REL+ W
Subjt:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW

A0A5D3C3M3 LINE-1 retrotransposable element ORF2 protein8.0e-0732.14Show/hide
Query:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW
        PW  I  N   F+    +    + +I F   NW  E  L+  +  +FA+S+++  SI + WN+  N W++ F R L +REL+ W
Subjt:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW

A0A6J1D884 uncharacterized protein LOC1110178193.5e-1048.44Show/hide
Query:  GQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW
        G+  RIRF LD W  E+ LA+ F D++A+SL +   + +CW+     WDLGF RGLF+REL  W
Subjt:  GQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW

A0A6J1E196 uncharacterized protein LOC1110250192.1e-1548.72Show/hide
Query:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFE
        PWFDIAKN + FQ+ + FKA Q  R+ F +D W    PL   F D+FA+SL Q   + +CWN E   WDL   RGLF+
Subjt:  PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTTGGTTTGATATAGCCAAGAATAACGCTCTATTCCAAAAGTTCATGACGTTTAAGGCTGGTCAAGACAGGAGAATTCGGTTCTTGCTCGATAATTGGGTAAGTGAATC
TCCCCTTGCACAAGTCTTCCTAGATATCTTTGCTGTCTCTTTGAATCAAGGGGACTCCATCGTTGAGTGCTGGAACGCAGAGCAGAATGCTTGGGATCTGGGTTTCCTTA
GAGGTCTTTTTGAGAGGGAATTGGCCAATTGG
mRNA sequenceShow/hide mRNA sequence
CCTTGGTTTGATATAGCCAAGAATAACGCTCTATTCCAAAAGTTCATGACGTTTAAGGCTGGTCAAGACAGGAGAATTCGGTTCTTGCTCGATAATTGGGTAAGTGAATC
TCCCCTTGCACAAGTCTTCCTAGATATCTTTGCTGTCTCTTTGAATCAAGGGGACTCCATCGTTGAGTGCTGGAACGCAGAGCAGAATGCTTGGGATCTGGGTTTCCTTA
GAGGTCTTTTTGAGAGGGAATTGGCCAATTGG
Protein sequenceShow/hide protein sequence
PWFDIAKNNALFQKFMTFKAGQDRRIRFLLDNWVSESPLAQVFLDIFAVSLNQGDSIVECWNAEQNAWDLGFLRGLFERELANW