; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004400 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004400
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 27
Genome locationscaffold262:321575..321847
RNA-Seq ExpressionMS004400
SyntenyMS004400
Gene Ontology termsNA
InterPro domainsIPR040274 - CLAVATA3/ESR (CLE)-related protein 27/43


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063931.1 putative Clavata3/esr-related 43 [Cucumis melo var. makuwa]4.9e-1253.49Show/hide
Query:  GATPP-RRRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN
        GATP  RRRLLS   I  FFIWVV  ++   A  AR   E+ NP ++G  G ++   KYFNGR+  S+  ++NKRTVPSCPDPLHN
Subjt:  GATPP-RRRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN

KAG6579278.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia]4.5e-2667.35Show/hide
Query:  FPAMC-GGATPP--RRRLLSSLLITAFFIWVVFCHRRHQASA-ARAFPENRNPEEI---GDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN
        FPAM  GGATPP  RRR LSS  +  FFIWVVFCH RHQA+A AR FP N+ PE+    G   KEKLLR YFNGR+F S+G Q+ KRTVPSCPDPLHN
Subjt:  FPAMC-GGATPP--RRRLLSSLLITAFFIWVVFCHRRHQASA-ARAFPENRNPEEI---GDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN

KAG6601785.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2164.52Show/hide
Query:  MCGGATPPR-RRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPEEI----GDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN
        MCGG TP R RR LS+LL+ A FIWVVFCH +  A +AR FPEN  PEE     G   KEKLLRKYFNG     +G +DNKRTVPSCPDPLHN
Subjt:  MCGGATPPR-RRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPEEI----GDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN

KAG7016789.1 hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-2567.39Show/hide
Query:  GGATPP--RRRLLSSLLITAFFIWVVFCHRRHQASA-ARAFPENRNPEEI---GDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN
        GGATPP  RRR LSS  +  FFIWVVFCH RHQA+A AR FP N+ PE+    G   KEKLLR YFNGR+F S+G Q+ KRTVPSCPDPLHN
Subjt:  GGATPP--RRRLLSSLLITAFFIWVVFCHRRHQASA-ARAFPENRNPEEI---GDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN

XP_021616588.1 CLAVATA3/ESR (CLE)-related protein 27-like [Manihot esculenta]2.1e-0738.78Show/hide
Query:  RRRLLSSLLITAFFIWVVFCHR-----RHQASAARAFPENRNPEEI---------GDAGKEKLLRKYFNGR----NFTSKGLQDNKRTVPSCPDPLHN
        RR ++ S  + A  ++++F  +       +A A R FP+N  P ++           A K+ LLRK+FNGR    N + KG ++NKR VPSCPDPLHN
Subjt:  RRRLLSSLLITAFFIWVVFCHR-----RHQASAARAFPENRNPEEI---------GDAGKEKLLRKYFNGR----NFTSKGLQDNKRTVPSCPDPLHN

TrEMBL top hitse value%identityAlignment
A0A151RPL8 Uncharacterized protein6.7e-0743.02Show/hide
Query:  RRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPE-EIGDAGKEKLLRKYFNGRNF------TSKGLQDNKRTVPSCPDPLHN
        RRLL   +     + +  CH      A R FP N  P  E     KE L  KYF+GRN       T KG  + KR VPSCPDPLHN
Subjt:  RRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPE-EIGDAGKEKLLRKYFNGRNF------TSKGLQDNKRTVPSCPDPLHN

A0A2C9VNI0 Uncharacterized protein1.0e-0738.78Show/hide
Query:  RRRLLSSLLITAFFIWVVFCHR-----RHQASAARAFPENRNPEEI---------GDAGKEKLLRKYFNGR----NFTSKGLQDNKRTVPSCPDPLHN
        RR ++ S  + A  ++++F  +       +A A R FP+N  P ++           A K+ LLRK+FNGR    N + KG ++NKR VPSCPDPLHN
Subjt:  RRRLLSSLLITAFFIWVVFCHR-----RHQASAARAFPENRNPEEI---------GDAGKEKLLRKYFNGR----NFTSKGLQDNKRTVPSCPDPLHN

A0A5A7VDX3 Putative Clavata3/esr-related 432.4e-1253.49Show/hide
Query:  GATPP-RRRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN
        GATP  RRRLLS   I  FFIWVV  ++   A  AR   E+ NP ++G  G ++   KYFNGR+  S+  ++NKRTVPSCPDPLHN
Subjt:  GATPP-RRRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN

A0A6A1W705 CLAVATA3/ESR (CLE)-related protein 431.3e-0743.82Show/hide
Query:  LLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPE--------EIGDAGKEKLLRKYFNGRNF----TSKGLQDNKRTVPSCPDPLHN
        L+  L+I    IWV  C    QA A R  P N   +         +    KE+LLRKYFNGR F    T+ G +++KR VPSCPDPLHN
Subjt:  LLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPE--------EIGDAGKEKLLRKYFNGRNF----TSKGLQDNKRTVPSCPDPLHN

F6HEW7 Uncharacterized protein8.7e-0745.74Show/hide
Query:  RRRLLSS----LLITAFFIWVVFCHRRHQASAARAFPENRNPEEIG------DAGKEKLLRKYFNGRNF----TSKGLQDNKRTVPSCPDPLHN
        RR + SS    L+I+   IW+  C    QA A R FP N   EE G          E L RK+FNGR F    T+KG  ++KR VPSCPDPLHN
Subjt:  RRRLLSS----LLITAFFIWVVFCHRRHQASAARAFPENRNPEEIG------DAGKEKLLRKYFNGRNF----TSKGLQDNKRTVPSCPDPLHN

SwissProt top hitse value%identityAlignment
Q9LUA1 CLAVATA3/ESR (CLE)-related protein 279.3e-0636.36Show/hide
Query:  RRRLLSSLLITAFFIWV--VFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNG------RNFTSKGLQDNKRTVPSCPDPLHN
        R  L ++LL+     ++  +FC    +  A R FPE       G   +E L++KYF         +F  KG+ ++KR VPSCPDPLHN
Subjt:  RRRLLSSLLITAFFIWV--VFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNG------RNFTSKGLQDNKRTVPSCPDPLHN

Arabidopsis top hitse value%identityAlignment
AT3G25905.1 CLAVATA3/ESR-RELATED 276.6e-0736.36Show/hide
Query:  RRRLLSSLLITAFFIWV--VFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNG------RNFTSKGLQDNKRTVPSCPDPLHN
        R  L ++LL+     ++  +FC    +  A R FPE       G   +E L++KYF         +F  KG+ ++KR VPSCPDPLHN
Subjt:  RRRLLSSLLITAFFIWV--VFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNG------RNFTSKGLQDNKRTVPSCPDPLHN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCCGGCAATGTGCGGCGGCGCTACTCCCCCACGGCGGCGGCTTCTGTCTTCTCTCTTGATTACGGCTTTCTTCATCTGGGTCGTGTTCTGCCACCGCCGCCACCAAGC
CTCCGCCGCCAGAGCATTCCCGGAAAACCGAAATCCAGAGGAAATCGGCGATGCCGGCAAGGAGAAGCTCCTCCGGAAGTACTTCAATGGAAGAAATTTCACTTCAAAAG
GGCTCCAAGACAACAAACGAACAGTCCCCAGCTGCCCTGATCCCCTCCACAAC
mRNA sequenceShow/hide mRNA sequence
TTTCCGGCAATGTGCGGCGGCGCTACTCCCCCACGGCGGCGGCTTCTGTCTTCTCTCTTGATTACGGCTTTCTTCATCTGGGTCGTGTTCTGCCACCGCCGCCACCAAGC
CTCCGCCGCCAGAGCATTCCCGGAAAACCGAAATCCAGAGGAAATCGGCGATGCCGGCAAGGAGAAGCTCCTCCGGAAGTACTTCAATGGAAGAAATTTCACTTCAAAAG
GGCTCCAAGACAACAAACGAACAGTCCCCAGCTGCCCTGATCCCCTCCACAAC
Protein sequenceShow/hide protein sequence
FPAMCGGATPPRRRLLSSLLITAFFIWVVFCHRRHQASAARAFPENRNPEEIGDAGKEKLLRKYFNGRNFTSKGLQDNKRTVPSCPDPLHN