; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004402 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004402
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein of unknown function (DUF1218)
Genome locationscaffold262:379763..380997
RNA-Seq ExpressionMS004402
SyntenyMS004402
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009606 - Modifying wall lignin-1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465787.1 PREDICTED: uncharacterized protein LOC103503388 [Cucumis melo]1.1e-7591.72Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GT+FEDK +N TYCVY+SDVATGYGVGAFLFLLSG+SLLMGVTKCMCFGRPLTPGGNRAW IIYF SS ATFLVAEACLIAGATKNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKATS+Q SHKANRSSSTVGM GYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

XP_022155200.1 uncharacterized protein LOC111022343 [Momordica charantia]7.0e-8399.36Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

XP_023538980.1 uncharacterized protein LOC111799749 [Cucurbita pepo subsp. pepo]1.3e-7691.72Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GT+FEDK +N TYCVYDSDVATGYGVG FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYF SSWATF+VAEACLIAGA KNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKATS+Q SHKA RSSSTVGM GYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

XP_023544604.1 uncharacterized protein LOC111804138 isoform X1 [Cucurbita pepo subsp. pepo]3.1e-7591.08Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GT+FEDK +N TYCVY+SDVATGYGVGAFLFLLSGESLLM VTKCMCFGRPLTPGGNRAW IIYF SSWA+FLVAEACLIAGATKNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKATS+  SHKANRSSSTVGM GYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

XP_038906605.1 uncharacterized protein LOC120092556 [Benincasa hispida]1.1e-7591.72Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GT+FEDK +N TYCVY+SDVATGYGVGAFLFLLSGE+LLMGVTKCMCFGRPLTPGGNRAW IIYF SS ATFLVAEACLIAGATKNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKATS+Q SHKANRSSSTVGM GYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

TrEMBL top hitse value%identityAlignment
A0A0A0KQ16 Uncharacterized protein2.0e-7591.08Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GT+FEDK +N TYCVY+SDVATGYGVGAFLFLLSG+SLLMGVTKCMCFG+PLTPGGNRAW IIYF SS ATFLVAEACLIAGATKNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKATS+Q SHKANRSSSTVGM GYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

A0A1S3CPP1 uncharacterized protein LOC1035033885.2e-7691.72Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GT+FEDK +N TYCVY+SDVATGYGVGAFLFLLSG+SLLMGVTKCMCFGRPLTPGGNRAW IIYF SS ATFLVAEACLIAGATKNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKATS+Q SHKANRSSSTVGM GYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

A0A6J1DLS4 uncharacterized protein LOC1110223433.4e-8399.36Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

A0A6J1GLY4 uncharacterized protein LOC1114551684.4e-7591.14Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GT+FEDK +N TYCVYDSDVATGYGVG FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYF SSWATF+VAEACLIAGA KNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKAT-STQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYYMYFTKAT S+Q SHKA RSSSTVGM GYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKAT-STQGSHKANRSSSTVGMAGYA

A0A6J1IEX4 uncharacterized protein LOC111472088 isoform X11.3e-7489.81Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        GT+FEDK +N TYCVY+SDVATGYGVGAFLFLLSGESLLM VTKCMCFGRPLTPGGNRAW IIYF SSWA+ LVAEACLIAGATKNAYHTKYRGMIYAQN
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
        L CETLRKGVFIAGAVFVVATMILNVYYY+YFTKATS++ SHKANRSSSTVGM GYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13380.1 Protein of unknown function (DUF1218)9.1e-6574.52Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        G   +D + N T+CVYDSDVATGYGVGAFLFLLS ESLLM VTKCMCFGRPL PG +RAW+IIYF SSW TFLVAEAC+IAGATKNAYHTKY   + +Q 
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA
          C +LRKG+FIAGAVF+VATM+LNVYYYMYFTK+ S+  +HKANRSSS +GMAGYA
Subjt:  LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA

AT1G52910.1 Protein of unknown function (DUF1218)9.5e-3044.85Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        G +  D  K   +C Y SD+AT YG GAF+ L   + ++M  ++C C G+ L PGG+RA  I+ F   W  FL+AE CL+AG+ +NAYHT YR M   +N
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  -LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKA
           CE +RKGVF AGA F + T I++ +YY+ +++A
Subjt:  -LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKA

AT1G61065.1 Protein of unknown function (DUF1218)8.3e-3450Show/hide
Query:  TYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQNLLCETLRKGVF
        +YCVYD D+ATG GVG+FL LL+ + L+M  ++C+C GR LTP G+R+WAI  F ++W  F +A+ CL+AG+ +NAYHTKYR      +  C +LRKGVF
Subjt:  TYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQNLLCETLRKGVF

Query:  IAGAVFVVATMILNVYYYMYFTKATSTQGS
         AGA F+V T I++  YY+  ++A   Q S
Subjt:  IAGAVFVVATMILNVYYYMYFTKATSTQGS

AT3G15480.1 Protein of unknown function (DUF1218)1.3e-3146.32Show/hide
Query:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN
        G +  D+ K   YCVY +D+AT YG GAF+ L   + L+M  ++C C G+ L PGG+RA AII F   W  FL+AE CL+A + +NAYHT+YR M   ++
Subjt:  GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQN

Query:  -LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKA
           CE +RKGVF AGA F + T I++ +YY+ +++A
Subjt:  -LLCETLRKGVFIAGAVFVVATMILNVYYYMYFTKA

AT4G27435.1 Protein of unknown function (DUF1218)1.5e-3556.91Show/hide
Query:  YCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQNLLCETLRKGVFI
        YCVYDSD ATGYGVGAFLF ++ + L+M V++C C G+PL PGG+RA A+I F  SW  FL+AE CL+AG+ +NAYHTKYR M       C+TLRKGVF 
Subjt:  YCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQNLLCETLRKGVFI

Query:  AGAVFVVATMILNVYYYMYFTKA
        AGA FV    I++ +YY ++  A
Subjt:  AGAVFVVATMILNVYYYMYFTKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAACTATGTTTGAAGATAAGCTAAAGAATGAGACGTACTGCGTCTACGATTCGGATGTTGCGACGGGTTATGGAGTAGGGGCTTTCTTATTTCTTCTTTCAGGTGAATC
TTTGCTGATGGGTGTCACCAAGTGCATGTGTTTTGGAAGACCCTTAACCCCGGGAGGCAATAGGGCATGGGCTATCATATACTTTTTCTCCTCATGGGCGACGTTTTTAG
TAGCGGAAGCATGTCTAATTGCTGGTGCGACGAAAAATGCATACCACACCAAGTATCGAGGGATGATCTACGCTCAAAACCTACTGTGCGAGACATTGAGGAAAGGAGTG
TTCATTGCCGGGGCGGTGTTCGTGGTTGCAACCATGATTCTTAATGTGTATTACTACATGTACTTCACCAAGGCGACATCGACGCAAGGGTCTCACAAAGCAAATCGCTC
GAGCTCAACGGTAGGGATGGCCGGGTATGCC
mRNA sequenceShow/hide mRNA sequence
GGAACTATGTTTGAAGATAAGCTAAAGAATGAGACGTACTGCGTCTACGATTCGGATGTTGCGACGGGTTATGGAGTAGGGGCTTTCTTATTTCTTCTTTCAGGTGAATC
TTTGCTGATGGGTGTCACCAAGTGCATGTGTTTTGGAAGACCCTTAACCCCGGGAGGCAATAGGGCATGGGCTATCATATACTTTTTCTCCTCATGGGCGACGTTTTTAG
TAGCGGAAGCATGTCTAATTGCTGGTGCGACGAAAAATGCATACCACACCAAGTATCGAGGGATGATCTACGCTCAAAACCTACTGTGCGAGACATTGAGGAAAGGAGTG
TTCATTGCCGGGGCGGTGTTCGTGGTTGCAACCATGATTCTTAATGTGTATTACTACATGTACTTCACCAAGGCGACATCGACGCAAGGGTCTCACAAAGCAAATCGCTC
GAGCTCAACGGTAGGGATGGCCGGGTATGCC
Protein sequenceShow/hide protein sequence
GTMFEDKLKNETYCVYDSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFFSSWATFLVAEACLIAGATKNAYHTKYRGMIYAQNLLCETLRKGV
FIAGAVFVVATMILNVYYYMYFTKATSTQGSHKANRSSSTVGMAGYA