; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004403 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004403
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranslocase subunit seca
Genome locationscaffold262:396327..396900
RNA-Seq ExpressionMS004403
SyntenyMS004403
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032498.1 hypothetical protein SDJN02_06547 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-5769.54Show/hide
Query:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA
        MNQ A Q++ FS        A  DRR+++VCPKPRRLGL+N T N+ +PFR RFDS+A ND LDLLF KGGC L+NFNS+S+QLASSPP+LCG+PPSRVA
Subjt:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA

Query:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
        NPLIQDARFG+EKPK+L   SP  A P  SPPPS+ R GG  R NFGN PAVRIEGFDCRLDRERRNRSIP LA
Subjt:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

XP_004140334.1 uncharacterized protein LOC101221533 [Cucumis sativus]3.6e-5878.06Show/hide
Query:  SAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLL--
        +AA DRR+++VCPKPRRLGL+N T N+ +PFR RFDS    D LDLLF KGGCGL+NFNS+++QLASSPP+ CGSPPSRVANPLIQDARFGDEKPKLL  
Subjt:  SAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLL--

Query:  -SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
         SP AASP  SPPPS+GRKGGC RVNFG NPAVRIEGFDCRLDRERRNRSIP LA
Subjt:  -SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

XP_022923501.1 uncharacterized protein LOC111431174 [Cucurbita moschata]4.7e-5870.11Show/hide
Query:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA
        MNQ A Q++ FS        A  DRR+++VCPKPRRLGL+N T N+ +PFR RFDS+A ND LDLLFFKGGC L+NFNS+S+QLASSPP+LCG+PPSRVA
Subjt:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA

Query:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
        NPLIQDARFG+EKPK+L   SP  A P  SPPPS+ R GG  R NFGN PAVRIEGFDCRLDRERRNRSIP LA
Subjt:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

XP_022971782.1 uncharacterized protein LOC111470460 [Cucurbita maxima]2.8e-5870.69Show/hide
Query:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA
        MNQ A Q++ FS        A  DRR+++VCPKPRRLGL+NATAN+ +PFR RFDS+A ND LDLLFFKGGC L+NF S+S+QLASSPP+LCG+PPSRVA
Subjt:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA

Query:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
        NPLIQDARFG+EKPK+L   SP  A P  SPPPS+ R GG  R NFGN PAVRIEGFDCRLDRERRNRSIP LA
Subjt:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

XP_038906747.1 uncharacterized protein LOC120092671 [Benincasa hispida]4.3e-5979.08Show/hide
Query:  AADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLL---S
        AADRR+++VCPKPRRLGL+N   N+ +PFR RFDS    D LDLLFFKGGCGL+NFNS+S+QLASSPP+ CGSPPSRVANPLIQDARFGDEKPKLL   S
Subjt:  AADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLL---S

Query:  PAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
        PAA+ PS SPPPS+GRKGGC R+NFGNNPAVRIEGFDCRLDRERRNRS+P LA
Subjt:  PAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

TrEMBL top hitse value%identityAlignment
A0A0A0KRF1 Uncharacterized protein1.8e-5878.06Show/hide
Query:  SAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLL--
        +AA DRR+++VCPKPRRLGL+N T N+ +PFR RFDS    D LDLLF KGGCGL+NFNS+++QLASSPP+ CGSPPSRVANPLIQDARFGDEKPKLL  
Subjt:  SAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLL--

Query:  -SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
         SP AASP  SPPPS+GRKGGC RVNFG NPAVRIEGFDCRLDRERRNRSIP LA
Subjt:  -SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

A0A1S3CR46 uncharacterized protein LOC1035033851.1e-5776.62Show/hide
Query:  SAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLLS-
        SAA DRR+++VCPKPRRLGL+N T N+ +PFR RFDS    D +DLLF KGGCGL+ FNS+++QLASS P+ CGSPPSRVANPLIQDARFGDEKPKLL  
Subjt:  SAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLLS-

Query:  -PAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
           AASP  SPPPS+GRKGGC RVNFGNNPAVRIEGFDCRLDRERRNRSIP LA
Subjt:  -PAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

A0A5D3C147 Uncharacterized protein1.1e-5776.62Show/hide
Query:  SAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLLS-
        SAA DRR+++VCPKPRRLGL+N T N+ +PFR RFDS    D +DLLF KGGCGL+ FNS+++QLASS P+ CGSPPSRVANPLIQDARFGDEKPKLL  
Subjt:  SAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLLS-

Query:  -PAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
           AASP  SPPPS+GRKGGC RVNFGNNPAVRIEGFDCRLDRERRNRSIP LA
Subjt:  -PAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

A0A6J1E6Z2 uncharacterized protein LOC1114311742.3e-5870.11Show/hide
Query:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA
        MNQ A Q++ FS        A  DRR+++VCPKPRRLGL+N T N+ +PFR RFDS+A ND LDLLFFKGGC L+NFNS+S+QLASSPP+LCG+PPSRVA
Subjt:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA

Query:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
        NPLIQDARFG+EKPK+L   SP  A P  SPPPS+ R GG  R NFGN PAVRIEGFDCRLDRERRNRSIP LA
Subjt:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

A0A6J1I2X1 uncharacterized protein LOC1114704601.3e-5870.69Show/hide
Query:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA
        MNQ A Q++ FS        A  DRR+++VCPKPRRLGL+NATAN+ +PFR RFDS+A ND LDLLFFKGGC L+NF S+S+QLASSPP+LCG+PPSRVA
Subjt:  MNQAAFQQSAFS--------AAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVA

Query:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
        NPLIQDARFG+EKPK+L   SP  A P  SPPPS+ R GG  R NFGN PAVRIEGFDCRLDRERRNRSIP LA
Subjt:  NPLIQDARFGDEKPKLL---SPAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13390.1 unknown protein2.5e-2541.3Show/hide
Query:  MNQAAFQQSAF------SAAADRRDQVVCPKPRRLGLVNATANEHHPFR----------PRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPP-FL
        MN    QQ+AF      +A +DRRD V+CPKPRR+G +N     HH  R             +S + ++ LD +  KGG G      + ++   +PP F 
Subjt:  MNQAAFQQSAF------SAAADRRDQVVCPKPRRLGLVNATANEHHPFR----------PRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPP-FL

Query:  CGSPPSRVANPLIQDARFGDEKPKLLSPAAASP--SPSPPPSSGRKGGC--GRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
         GSPPSRV+NPL +D+ F +E   + SP+ ++P  +   PPSS R G C     +FGNNP VR+ GFDC  DR   NRSI TLA
Subjt:  CGSPPSRVANPLIQDARFGDEKPKLLSPAAASP--SPSPPPSSGRKGGC--GRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

AT1G13390.2 unknown protein2.5e-2541.3Show/hide
Query:  MNQAAFQQSAF------SAAADRRDQVVCPKPRRLGLVNATANEHHPFR----------PRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPP-FL
        MN    QQ+AF      +A +DRRD V+CPKPRR+G +N     HH  R             +S + ++ LD +  KGG G      + ++   +PP F 
Subjt:  MNQAAFQQSAF------SAAADRRDQVVCPKPRRLGLVNATANEHHPFR----------PRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPP-FL

Query:  CGSPPSRVANPLIQDARFGDEKPKLLSPAAASP--SPSPPPSSGRKGGC--GRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
         GSPPSRV+NPL +D+ F +E   + SP+ ++P  +   PPSS R G C     +FGNNP VR+ GFDC  DR   NRSI TLA
Subjt:  CGSPPSRVANPLIQDARFGDEKPKLLSPAAASP--SPSPPPSSGRKGGC--GRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

AT1G68490.1 unknown protein8.7e-3451.05Show/hide
Query:  MNQAAFQQSAFSAAAD---------RRDQ--VVCPKPRRLGLVNATANEHHPFR----------PRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASS
        MN  A Q +AF+A  D          RDQ  VVCPKPRR+GL N   N HHP R             +S A  D LD++  K G G +  N    Q+  S
Subjt:  MNQAAFQQSAFSAAAD---------RRDQ--VVCPKPRRLGLVNATANEHHPFR----------PRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASS

Query:  P-PFLCGSPPSRVANPLIQDARFGDEKPKLLS----PAAASPSPSPPPSSGRKGGC-GRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA
        P PFLCGSPPSRVANPL QDARF DE   + S         PS SP  SSGRKGGC  R NFGN+P VR+EGFDC LDR+ RN SIP LA
Subjt:  P-PFLCGSPPSRVANPLIQDARFGDEKPKLLS----PAAASPSPSPPPSSGRKGGC-GRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA

AT3G02555.1 unknown protein1.6e-2747.13Show/hide
Query:  MNQAAFQQSAFSAAADRR----------DQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSR
        MN  + QQ+AF +  + R          D VVCPKPRR        N   PFR  F     +D  D     G   LD F    S  + SPPF  GSPPSR
Subjt:  MNQAAFQQSAFSAAADRR----------DQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSR

Query:  VANPLIQDARFGDEKPKLLSPAAASPSPSPPPSSGRKGGCGRVNFGNNPA-VRIEGFDCRLDRERRNRSIPTLA
         ANPL QDARFGDEK   +SP   S SP  P +S  K GCGR+ FG  PA VR+EGFDC L+R+R N SIP +A
Subjt:  VANPLIQDARFGDEKPKLLSPAAASPSPSPPPSSGRKGGCGRVNFGNNPA-VRIEGFDCRLDRERRNRSIPTLA

AT5G16110.1 unknown protein2.1e-2744.86Show/hide
Query:  MNQAAFQQSAFSA-----AADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGL-------DNFNSNSSQLASSPPFLCGSPP
        MN    QQ+AF +       DR+D VVCPKPRR+GL+    N   P R      A     DL   K G  L       ++  +    L+SSPP+  GSPP
Subjt:  MNQAAFQQSAFSA-----AADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGL-------DNFNSNSSQLASSPPFLCGSPP

Query:  SRVANPLIQDARFGDEKPKLLSP---------AAASPSPSPPPSSGRKGGCGRVNFG-NNPAVRIEGFDCRLDRERRNRSIPTLA
        SR ANPL QDARF DEK   +SP         A   PSPS   SS    GC R+ FG N+PAVR+EGFDC L+R+R+N SIP +A
Subjt:  SRVANPLIQDARFGDEKPKLLSP---------AAASPSPSPPPSSGRKGGCGRVNFG-NNPAVRIEGFDCRLDRERRNRSIPTLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAGGCGGCGTTTCAACAGAGCGCGTTTTCCGCCGCCGCCGACCGCCGTGACCAGGTGGTTTGCCCGAAACCCCGCCGTCTCGGACTCGTTAACGCCACCGCCAA
CGAACACCACCCATTTAGACCCCGTTTTGACTCCATGGCACCCAACGATCCTCTGGATCTCCTCTTCTTCAAGGGTGGTTGTGGATTGGACAATTTTAACAGTAACAGTT
CACAATTAGCCTCGTCGCCGCCGTTTTTATGTGGGTCGCCGCCGAGCAGAGTAGCTAACCCATTAATCCAGGACGCCCGATTTGGGGATGAGAAGCCGAAGCTCCTCTCG
CCGGCAGCGGCGTCTCCGTCGCCGTCGCCGCCGCCGTCGTCCGGTCGGAAAGGCGGCTGTGGTCGGGTGAATTTCGGTAACAATCCAGCGGTGAGGATCGAGGGGTTCGA
TTGCCGCCTCGACCGGGAGAGGCGAAACCGCAGCATCCCTACTCTGGCT
mRNA sequenceShow/hide mRNA sequence
ATGAACCAGGCGGCGTTTCAACAGAGCGCGTTTTCCGCCGCCGCCGACCGCCGTGACCAGGTGGTTTGCCCGAAACCCCGCCGTCTCGGACTCGTTAACGCCACCGCCAA
CGAACACCACCCATTTAGACCCCGTTTTGACTCCATGGCACCCAACGATCCTCTGGATCTCCTCTTCTTCAAGGGTGGTTGTGGATTGGACAATTTTAACAGTAACAGTT
CACAATTAGCCTCGTCGCCGCCGTTTTTATGTGGGTCGCCGCCGAGCAGAGTAGCTAACCCATTAATCCAGGACGCCCGATTTGGGGATGAGAAGCCGAAGCTCCTCTCG
CCGGCAGCGGCGTCTCCGTCGCCGTCGCCGCCGCCGTCGTCCGGTCGGAAAGGCGGCTGTGGTCGGGTGAATTTCGGTAACAATCCAGCGGTGAGGATCGAGGGGTTCGA
TTGCCGCCTCGACCGGGAGAGGCGAAACCGCAGCATCCCTACTCTGGCT
Protein sequenceShow/hide protein sequence
MNQAAFQQSAFSAAADRRDQVVCPKPRRLGLVNATANEHHPFRPRFDSMAPNDPLDLLFFKGGCGLDNFNSNSSQLASSPPFLCGSPPSRVANPLIQDARFGDEKPKLLS
PAAASPSPSPPPSSGRKGGCGRVNFGNNPAVRIEGFDCRLDRERRNRSIPTLA