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MS004404 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004404
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc finger protein JAGGED
Genome locationscaffold262:419470..419814
RNA-Seq ExpressionMS004404
SyntenyMS004404
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0008285 - negative regulation of cell population proliferation (biological process)
GO:0010094 - specification of carpel identity (biological process)
GO:0010097 - specification of stamen identity (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR031113 - Zinc finger protein JAGGED-like
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047421.1 zinc finger protein JAGGED [Cucumis melo var. makuwa]1.9e-3089.33Show/hide
Query:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RRSEGSPLDLNNLPED++RDGKQI+ED+S GHRKKKSG+KEGK +ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
KGN51212.2 hypothetical protein Csa_008797 [Cucumis sativus]1.9e-3089.33Show/hide
Query:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RRSEGSPLDLNNLPED++RDGKQI+ED+S GHRKKKSG+KEGK +ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
XP_008465782.1 PREDICTED: zinc finger protein JAGGED [Cucumis melo]5.6e-3089.19Show/hide
Query:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RSEGSPLDLNNLPED++RDGKQI+ED+S GHRKKKSG+KEGK +ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
XP_011655169.1 zinc finger protein JAGGED [Cucumis sativus]5.6e-3089.19Show/hide
Query:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RSEGSPLDLNNLPED++RDGKQI+ED+S GHRKKKSG+KEGK +ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
XP_038876123.1 zinc finger protein JAGGED-like [Benincasa hispida]9.5e-3087.84Show/hide
Query:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RSEGSPLDLNNLPED++RDGKQI+ED+S GHRKKKSG+KEGK +E+GKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
TrEMBL top hitse value%identityAlignment
A0A0A0KTC2 C2H2-type domain-containing protein9.3e-3189.33Show/hide
Query:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RRSEGSPLDLNNLPED++RDGKQI+ED+S GHRKKKSG+KEGK +ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
A0A1S3CQ11 zinc finger protein JAGGED2.7e-3089.19Show/hide
Query:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RSEGSPLDLNNLPED++RDGKQI+ED+S GHRKKKSG+KEGK +ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
A0A5A7U1F5 Zinc finger protein JAGGED9.3e-3189.33Show/hide
Query:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RRSEGSPLDLNNLPED++RDGKQI+ED+S GHRKKKSG+KEGK +ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
A0A6J1GRC2 zinc finger protein JAGGED-like1.1e-2886.49Show/hide
Query:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RS+GSPLDLNNLPED++RD KQI+EDTS GHRKKKSG KEG ++ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
A0A6J1I6U1 zinc finger protein JAGGED-like1.1e-2886.49Show/hide
Query:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RS+GSPLDLNNLPED++RD KQI+EDTS GHRKKKSG KEG ++ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
SwissProt top hitse value%identityAlignment
Q6S591 Zinc finger protein JAGGED5.3e-2373.33Show/hide
Query:  RSEGSPLDLNNLPEDFLRDG-KQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        R E + LDLNNLP+DF +DG KQ +E+ S   ++KK G KEGKD ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RSEGSPLDLNNLPEDFLRDG-KQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Q6S592 Zinc finger protein JAGGED-like1.7e-1356Show/hide
Query:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        R  E + LDLNNLP+D  RD     E+          G +E K  + GK YECRFCSLKF KSQALGGHMNRHRQ
Subjt:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Q9LG97 Zinc finger protein STAMENLESS 11.2e-1964.63Show/hide
Query:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSI-------GHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        RR EGSPLDLNNLP++F   GKQ VE ++          R  K     GKD E+GKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSI-------GHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Arabidopsis top hitse value%identityAlignment
AT1G13400.1 C2H2 and C2HC zinc fingers superfamily protein1.2e-1456Show/hide
Query:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        R  E + LDLNNLP+D  RD     E+          G +E K  + GK YECRFCSLKF KSQALGGHMNRHRQ
Subjt:  RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
AT1G68480.1 C2H2 and C2HC zinc fingers superfamily protein3.7e-2473.33Show/hide
Query:  RSEGSPLDLNNLPEDFLRDG-KQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        R E + LDLNNLP+DF +DG KQ +E+ S   ++KK G KEGKD ESGKVYECRFCSLKFCKSQALGGHMNRHRQ
Subjt:  RSEGSPLDLNNLPEDFLRDG-KQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ
AT2G28200.1 C2H2-type zinc finger family protein5.6e-0455.17Show/hide
Query:  ESGKVYECRFCSLKFCKSQALGGHMNRHR
        ++ KV+EC  C  +F   QALGGHM RHR
Subjt:  ESGKVYECRFCSLKFCKSQALGGHMNRHR
AT5G05120.1 C2H2 and C2HC zinc fingers superfamily protein2.5e-0457.69Show/hide
Query:  VYECRFCSLKFCKSQALGGHMNRHRQ
        +Y+C++C  KF K+QALGGH N HR+
Subjt:  VYECRFCSLKFCKSQALGGHMNRHRQ
AT5G27880.1 C2H2 and C2HC zinc fingers superfamily protein3.0e-0540.35Show/hide
Query:  VEDTSIGHRKKKSGVKEGKD------QESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        +E++S G     S V+ G++       +S K+Y C FC   F  SQALGGH N H+Q
Subjt:  VEDTSIGHRKKKSGVKEGKD------QESGKVYECRFCSLKFCKSQALGGHMNRHRQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGCGATCCGAGGGAAGCCCATTAGACCTCAACAACTTGCCTGAAGATTTCCTCAGAGATGGCAAACAGATTGTTGAAGATACCTCCATTGGTCATCGGAAAAAGAAAAG
CGGCGTGAAGGAGGGAAAAGATCAGGAGTCCGGAAAAGTGTATGAATGCAGATTTTGTTCCCTCAAGTTCTGCAAATCCCAGGCCCTCGGCGGCCACATGAACCGCCACC
GCCAA
mRNA sequenceShow/hide mRNA sequence
AGGCGATCCGAGGGAAGCCCATTAGACCTCAACAACTTGCCTGAAGATTTCCTCAGAGATGGCAAACAGATTGTTGAAGATACCTCCATTGGTCATCGGAAAAAGAAAAG
CGGCGTGAAGGAGGGAAAAGATCAGGAGTCCGGAAAAGTGTATGAATGCAGATTTTGTTCCCTCAAGTTCTGCAAATCCCAGGCCCTCGGCGGCCACATGAACCGCCACC
GCCAA
Protein sequenceShow/hide protein sequence
RRSEGSPLDLNNLPEDFLRDGKQIVEDTSIGHRKKKSGVKEGKDQESGKVYECRFCSLKFCKSQALGGHMNRHRQ