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MS004405 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004405
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger protein JAGGED
Genome locationscaffold262:420254..420652
RNA-Seq ExpressionMS004405
SyntenyMS004405
Gene Ontology termsGO:0007275 - multicellular organism development (biological process)
GO:0009451 - RNA modification (biological process)
InterPro domainsIPR031113 - Zinc finger protein JAGGED-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047421.1 zinc finger protein JAGGED [Cucumis melo var. makuwa]1.9e-4170.55Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SGS G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+ VE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAAA FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

KGN51212.2 hypothetical protein Csa_008797 [Cucumis sativus]3.3e-4169.86Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SG+ G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+SVE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAA  FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

TYK04130.1 zinc finger protein JAGGED [Cucumis melo var. makuwa]1.9e-4170.55Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SGS G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+ VE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAAA FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

XP_008465782.1 PREDICTED: zinc finger protein JAGGED [Cucumis melo]1.9e-4170.55Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SGS G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+ VE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAAA FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

XP_011655169.1 zinc finger protein JAGGED [Cucumis sativus]3.3e-4169.86Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SG+ G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+SVE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAA  FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

TrEMBL top hitse value%identityAlignment
A0A0A0KTC2 C2H2-type domain-containing protein1.6e-4169.86Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SG+ G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+SVE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAA  FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

A0A1S3CQ11 zinc finger protein JAGGED9.3e-4270.55Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SGS G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+ VE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAAA FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

A0A5A7U1F5 Zinc finger protein JAGGED9.3e-4270.55Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SGS G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+ VE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAAA FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

A0A5D3BYD4 Zinc finger protein JAGGED9.3e-4270.55Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC
        SGS G   TLPLRFPTRM       TLLP PPPP  P SHQPYLY SP+RP ++FPSYYPPPQASI+DYY   V G+ SQCSHQ VNYGS+ VE+++YTC
Subjt:  SGSCGDHPTLPLRFPTRM------STLLPTPPPP--PPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGSTSVEATNYTC

Query:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF
        IGAPVGHAAA FGGRD  GG  GRDGS   QRLDVPS INRF DGF
Subjt:  IGAPVGHAAAAFGGRDAPGGGAGRDGS--HQRLDVPSPINRFHDGF

A0A6J1GRC2 zinc finger protein JAGGED-like4.0e-3766.22Show/hide
Query:  SGSCGDHPTLPLRFPTRM------STLL---PTPPPPPPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGST--SVEATN
        SG  G  PTL LRFPTRM      +TLL   P+PPPPPP HQPYLY+SPSRP ++FPSYYPPPQASI+DYY   V G+ +QCSHQ +NYGST  S+E+++
Subjt:  SGSCGDHPTLPLRFPTRM------STLL---PTPPPPPPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYY---VFGSTSQCSHQNVNYGST--SVEATN

Query:  YTCIGAPVGHAAAAFGGRDAPGGGAGRDGS-HQRLDVPSPINRFHDGF
        YTCIGAPVG  AA FGGR++   G+GRDGS  QRLDVPS INRF DGF
Subjt:  YTCIGAPVGHAAAAFGGRDAPGGGAGRDGS-HQRLDVPSPINRFHDGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTGGCAGCTGCGGCGATCATCCCACGCTGCCTCTCAGATTCCCCACCAGAATGTCCACCCTTCTCCCGACCCCGCCACCACCCCCACCGTCGCACCAACCGTATTTATA
CACCTCCCCGTCGCGCCCTGCCGCGGCGTTCCCGTCTTACTATCCTCCGCCGCAGGCCTCCATCAGCGACTACTACGTGTTTGGGAGCACCTCGCAGTGCAGCCACCAGA
ACGTGAACTATGGCTCCACCTCCGTGGAGGCCACCAATTACACTTGCATCGGCGCGCCGGTGGGCCATGCGGCGGCGGCGTTCGGCGGCCGGGATGCTCCGGGAGGAGGT
GCCGGCAGAGACGGCTCCCACCAGCGTTTGGATGTCCCTTCTCCAATCAATCGGTTTCATGATGGGTTC
mRNA sequenceShow/hide mRNA sequence
TCTGGCAGCTGCGGCGATCATCCCACGCTGCCTCTCAGATTCCCCACCAGAATGTCCACCCTTCTCCCGACCCCGCCACCACCCCCACCGTCGCACCAACCGTATTTATA
CACCTCCCCGTCGCGCCCTGCCGCGGCGTTCCCGTCTTACTATCCTCCGCCGCAGGCCTCCATCAGCGACTACTACGTGTTTGGGAGCACCTCGCAGTGCAGCCACCAGA
ACGTGAACTATGGCTCCACCTCCGTGGAGGCCACCAATTACACTTGCATCGGCGCGCCGGTGGGCCATGCGGCGGCGGCGTTCGGCGGCCGGGATGCTCCGGGAGGAGGT
GCCGGCAGAGACGGCTCCCACCAGCGTTTGGATGTCCCTTCTCCAATCAATCGGTTTCATGATGGGTTC
Protein sequenceShow/hide protein sequence
SGSCGDHPTLPLRFPTRMSTLLPTPPPPPPSHQPYLYTSPSRPAAAFPSYYPPPQASISDYYVFGSTSQCSHQNVNYGSTSVEATNYTCIGAPVGHAAAAFGGRDAPGGG
AGRDGSHQRLDVPSPINRFHDGF