CuGenDBv2

Gene ID	MS004406
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold262:438407..439047
RNA-Seq Expression	MS004406
Synteny	MS004406
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process) GO:0016740 - transferase activity (molecular function) GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_017250619.1 PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus]

1.2e-48

45.33

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        IP+G C +I ++ AR+WWGS +   K+HW  W K+  PK  GGL FR    +N+AL+AKQAWR+L    P  L+S+VL+ KYF  SS +  K  +  S  
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIP-GPNFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK
        W+  +WGK LL++GLR RIGN  + R F DPW+   P+FLPI+ G+    +KV + +   G W+  +I   F   D  LIL +P+S  +  DSW WHY  
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIP-GPNFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK

Query:  RGYYSVKSGYKLCT
        +G Y+VKSGYKL T
Subjt:  RGYYSVKSGYKLCT

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]

8.0e-82

66.35

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        +PKGFC+++S+MFARFWWGS+NDT KLHW+ WE+MC PKELGGLNFR+LEGFN+ALVAKQ WRVL  ++PN LVS+VLK KYF DS V+     +N SYF
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK
        WKGF+WG+DLL+KGLR R+GN STI +FSDPWIP P +F PI+   G  ++KVADL+N  G WD ++IS IFCEEDRDLIL++P+SP N  DSW+WH+ K
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK

Query:  RGYYSVKS
        RG+Y+VKS
Subjt:  RGYYSVKS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]

2.5e-67

65.78

Show/hide

Query:  KLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYFWKGFLWGKDLLVKGLRLRIGNSSTI
        KLHW+KW +MCYPKE GGLNFR+LEGFN+ALVAK  WR L  + PN LVSKVLK KYF+D+S++    +  SSYFWKGFLWG+DLLVKGLRLR+GN STI
Subjt:  KLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYFWKGFLWGKDLLVKGLRLRIGNSSTI

Query:  RVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGKRGYYSVKSGYKL
        + FSDPW+P P  F P+   NG L+  VA  +   G WD   IS+ FC EDRDLIL++PIS  NLQDSWLWHY KRG YSV+SGYKL
Subjt:  RVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGKRGYYSVKSGYKL

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]

4.6e-53

48.58

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        +P+GFCDDI R  A+FWWGS  D   +HW KWEK+   K  GGL FRE   FN+ALVAKQAWR+L  + PN LVS+VL+ +YF++SS +  K   N+SY 
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK
        W+  +WG+ ++ KG+R RIGN   I +FSD W+P P  F PI   +  ++  VADL+     WDE  +   F + D   IL +P+     +D  LWHY K
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK

Query:  RGYYSVKSGYKL
        RG YSVKSGY+L
Subjt:  RGYYSVKSGYKL

XP_030505522.1 uncharacterized protein LOC115720515 [Cannabis sativa]

7.6e-56

47.64

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        IP+G C++I ++ AR+WWGS     K+HW  W+K+C+ K  GGL FR    +N+AL+AKQAWRVL   +P  ++++VLK +YF   S +    S + S  
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIP-GPNFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK
        W+G +WGK+LL+KGLR RIGN +  RVF DPWIP  P+FLPI+   GNL + V++L+ Q+G W+ ++I  +F   D  LIL++PI+     D WLWH+  
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIP-GPNFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK

Query:  RGYYSVKSGYKL
         G+YSVKSGY L
Subjt:  RGYYSVKSGYKL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BRN0 uncharacterized protein LOC111004787

3.9e-82

66.35

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        +PKGFC+++S+MFARFWWGS+NDT KLHW+ WE+MC PKELGGLNFR+LEGFN+ALVAKQ WRVL  ++PN LVS+VLK KYF DS V+     +N SYF
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK
        WKGF+WG+DLL+KGLR R+GN STI +FSDPWIP P +F PI+   G  ++KVADL+N  G WD ++IS IFCEEDRDLIL++P+SP N  DSW+WH+ K
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK

Query:  RGYYSVKS
        RG+Y+VKS
Subjt:  RGYYSVKS

A0A6J1DX30 uncharacterized protein LOC111024874

1.2e-67

65.78

Show/hide

Query:  KLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYFWKGFLWGKDLLVKGLRLRIGNSSTI
        KLHW+KW +MCYPKE GGLNFR+LEGFN+ALVAK  WR L  + PN LVSKVLK KYF+D+S++    +  SSYFWKGFLWG+DLLVKGLRLR+GN STI
Subjt:  KLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYFWKGFLWGKDLLVKGLRLRIGNSSTI

Query:  RVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGKRGYYSVKSGYKL
        + FSDPW+P P  F P+   NG L+  VA  +   G WD   IS+ FC EDRDLIL++PIS  NLQDSWLWHY KRG YSV+SGYKL
Subjt:  RVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGKRGYYSVKSGYKL

A0A803NHG3 Uncharacterized protein

3.9e-50

45.75

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        + K     I RM ARFWWGST    K+HW KWE +C PKE GGL FR+LE FN+AL+AKQ WR L+   P  L SKVLK  YF   SV+  K   ++S+ 
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK
        W+  +WGK++++KG R R+GN   +RV  DPW+P P +F           L V DL + +G+WDE+ I   F  ED ++IL LP    +L+D  +WHY +
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK

Query:  RGYYSVKSGYKL
         G Y+V+SGY++
Subjt:  RGYYSVKSGYKL

A0A803Q185 Uncharacterized protein

3.9e-50

46.23

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        + KG   ++ RM ARFWWGS+    K+HW KWE +C PK+ GG+ FR+L  FN+AL+AKQ WR ++   PN L ++VLK  YF  +SV+  K   ++S+ 
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK
        W+  +WGK L++KG R R+G+ S IRV  DPW+P P  F          +L V DL    G WD+  IS +F ++D ++ILALP S  +L D  LWHY K
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK

Query:  RGYYSVKSGYKL
         G YSVKSGY++
Subjt:  RGYYSVKSGYKL

A0A803QQT2 Uncharacterized protein

1.5e-49

45.75

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        +PK     + RM +RFWWGS +   K+HW KW  +C PK+ GGL FR+L  FN+AL+AKQ WR L+   P  L S+VLK  YF    V+      N+S+ 
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK
        W+  +WGK L++KG R R+GN  ++RV  DPW+P P  F      +   NL V DL    G WDE  I +IF   D DLIL +P S  + +D  LWHY K
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGP-NFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGK

Query:  RGYYSVKSGYKL
         G YSVKSGY++
Subjt:  RGYYSVKSGYKL

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

4.1e-20

28.38

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKY----FQDSSVIFVKTSKN
        +P+   + + ++   F WGST +  K H +KW K+C PK+ GGL  R  +  N+AL++K  WR+L+ +  N L + VL+ KY     +DS  +  K S +
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKY----FQDSSVIFVKTSKN

Query:  SSYFWKGFLWG-KDLLVKGLRLRIGNSSTIRVFSDPWIPGPNFLPISGGNGNLN---LKVADLMNQAGMWDENIISNIFCEEDRDLILALPIS-PCNLQD
        S+  W+    G +D++  G+    G+   IR ++D W+ G   L +  G    +   +   DL      WD   I        R  + A+ +      +D
Subjt:  SSYFWKGFLWG-KDLLVKGLRLRIGNSSTIRVFSDPWIPGPNFLPISGGNGNLN---LKVADLMNQAGMWDENIISNIFCEEDRDLILALPIS-PCNLQD

Query:  SWLWHYGKRGYYSVKSGYKLCT
           W + + G +SV+S Y++ T
Subjt:  SWLWHYGKRGYYSVKSGYKLCT

P93295 Uncharacterized mitochondrial protein AtMg00310

5.1e-23

36.17

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKE-LGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSY
        + K  C  ++     FWW S  +  K+ W+ W+K+C  KE  GGL FR+L  FN+AL+AKQ++R++    P+ L+S++L+++YF  SS++        SY
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKE-LGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSY

Query:  FWKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGPNFLP
         W+  + G++LL +GL   IG+    +V+ D WI     LP
Subjt:  FWKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGPNFLP

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

1.4e-31

32.29

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF
        +PK  C  I  + A FWW +  +   +HW  W+ +   K  GG+ F+++E FN AL+ KQ WR+L    P  L++KV K++YF  S  +        S+ 
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYF

Query:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWI---PGPNFL------PISGGNGNLNLKVADLMNQAGM-WDENIISNIFCEEDRDLILALPISPCNLQ
        WK     +++L +G R  +GN   I ++   W+   P    L      P    + +  LKV+DL++++G  W +++I  +F E +R LI  L      + 
Subjt:  WKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWI---PGPNFL------PISGGNGNLNLKVADLMNQAGM-WDENIISNIFCEEDRDLILALPISPCNLQ

Query:  DSWLWHYGKRGYYSVKSGYKLCT
        DS+ W Y   G Y+VKSGY + T
Subjt:  DSWLWHYGKRGYYSVKSGYKLCT

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

3.6e-24

36.17

Show/hide

Query:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKE-LGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSY
        + K  C  ++     FWW S  +  K+ W+ W+K+C  KE  GGL FR+L  FN+AL+AKQ++R++    P+ L+S++L+++YF  SS++        SY
Subjt:  IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKE-LGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSY

Query:  FWKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGPNFLP
         W+  + G++LL +GL   IG+    +V+ D WI     LP
Subjt:  FWKGFLWGKDLLVKGLRLRIGNSSTIRVFSDPWIPGPNFLP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATCCCAAAAGGTTTCTGTGATGATATTTCCCGTATGTTTGCGCGCTTTTGGTGGGGCTCAACAAACGACACTTGGAAACTTCATTGGATTAAGTGGGAAAAAATGTGCTA
TCCTAAAGAATTAGGAGGGTTAAACTTCAGAGAGTTGGAAGGCTTTAATAAAGCTCTGGTGGCCAAACAGGCATGGAGGGTTCTTAAATCCGAATCTCCTAATCCCCTTG
TCTCAAAAGTTTTGAAAACTAAATATTTTCAAGACTCTTCTGTGATCTTTGTTAAGACTTCCAAGAATTCCTCCTACTTTTGGAAAGGTTTCTTGTGGGGTAAAGATCTT
CTTGTTAAGGGACTACGTCTTCGTATTGGTAACAGCTCTACAATAAGAGTTTTTTCTGATCCCTGGATTCCTGGGCCAAATTTCCTTCCCATTTCAGGTGGTAATGGTAA
TCTGAATCTTAAGGTTGCTGATTTAATGAATCAAGCAGGGATGTGGGATGAAAATATCATCTCAAATATTTTCTGTGAAGAAGATAGAGATCTTATTCTAGCATTGCCTA
TTAGTCCTTGTAATCTTCAGGATTCATGGCTTTGGCATTATGGCAAACGAGGGTATTATAGTGTTAAGAGTGGCTATAAACTCTGCACC

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

IPKGFCDDISRMFARFWWGSTNDTWKLHWIKWEKMCYPKELGGLNFRELEGFNKALVAKQAWRVLKSESPNPLVSKVLKTKYFQDSSVIFVKTSKNSSYFWKGFLWGKDL
LVKGLRLRIGNSSTIRVFSDPWIPGPNFLPISGGNGNLNLKVADLMNQAGMWDENIISNIFCEEDRDLILALPISPCNLQDSWLWHYGKRGYYSVKSGYKLCT

MS004406 (gene) of Bitter gourd (TR) v1 genome