; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004407 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004407
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold262:439428..439775
RNA-Seq ExpressionMS004407
SyntenyMS004407
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONK57296.1 uncharacterized protein A4U43_C10F18610 [Asparagus officinalis]1.3e-0428.7Show/hide
Query:  ISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDAC---GPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGIL
        +S   +K  WI   +    + +N + P      +T  +  W+PP  G  KLN DA         GLGF++    G+ VAA++  V   + P L E  G+ 
Subjt:  ISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDAC---GPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGIL

Query:  VGLRFARS
          L + +S
Subjt:  VGLRFARS

ONK67926.1 uncharacterized protein A4U43_C05F5270 [Asparagus officinalis]7.4e-0529.91Show/hide
Query:  SLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDAC---GPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGILV
        S   +K  WI   +    + +N + P   G   T  +  W+PP  G  KLN DA         GLGF++    G+ VAA++  V   + P L E  G+  
Subjt:  SLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDAC---GPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGILV

Query:  GLRFARS
         L + +S
Subjt:  GLRFARS

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]1.7e-1743.55Show/hide
Query:  CDQNSAVHGKQISLPEAKCEWIRSYIQNFLQAK--NAISP-----PVPGTRRTHYSQIWNPPCDGHLKLNTD-ACGPSSSGLGFLLHRSDGTLVAAKSVF
        CD+NS  HG  +S P  +C WI SY QN+ QA+    ISP     P P  R       W PP D  +K+N+D AC  +S+GLG ++    G L+ AKS+F
Subjt:  CDQNSAVHGKQISLPEAKCEWIRSYIQNFLQAK--NAISP-----PVPGTRRTHYSQIWNPPCDGHLKLNTD-ACGPSSSGLGFLLHRSDGTLVAAKSVF

Query:  VPQSLPPLLTEIEGILVGLRFARS
        +P  L PL  EI GIL  L+ A S
Subjt:  VPQSLPPLLTEIEGILVGLRFARS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.8e-1542.98Show/hide
Query:  DQNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTD-ACGPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPL
        D+NS +HGKQ+S  E KCEW+  ++ +  QA+ +   P   +      Q W P     LKLNTD AC  +S+  G ++  S  +LVAA S+ VP  L PL
Subjt:  DQNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTD-ACGPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPL

Query:  LTEIEGILVGLRFA
        L EI  IL GL+FA
Subjt:  LTEIEGILVGLRFA

XP_023897447.1 uncharacterized protein LOC112009345 [Quercus suber]6.0e-0731.36Show/hide
Query:  CDQNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDACGPSS---SGLGFLLHRSDGTLVAAKSVFVPQSL
        C++N   HG +   PEA  +W+  Y+  +    +A +  VP  R    S  WNPP    LK+N D     +    G+G ++    G +VAA S  +P  L
Subjt:  CDQNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDACGPSS---SGLGFLLHRSDGTLVAAKSVFVPQSL

Query:  PPLLTEIEGILVGLRFAR
         PL  E++    GL+ A+
Subjt:  PPLLTEIEGILVGLRFAR

TrEMBL top hitse value%identityAlignment
A0A5P1E8M9 RNase H domain-containing protein6.1e-0528.7Show/hide
Query:  ISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDAC---GPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGIL
        +S   +K  WI   +    + +N + P      +T  +  W+PP  G  KLN DA         GLGF++    G+ VAA++  V   + P L E  G+ 
Subjt:  ISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDAC---GPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGIL

Query:  VGLRFARS
          L + +S
Subjt:  VGLRFARS

A0A5P1EPS3 RNase H domain-containing protein3.6e-0529.91Show/hide
Query:  SLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDAC---GPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGILV
        S   +K  WI   +    + +N + P   G   T  +  W+PP  G  KLN DA         GLGF++    G+ VAA++  V   + P L E  G+  
Subjt:  SLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDAC---GPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGILV

Query:  GLRFARS
         L + +S
Subjt:  GLRFARS

A0A6J1BQ49 uncharacterized protein LOC1110047868.2e-1843.55Show/hide
Query:  CDQNSAVHGKQISLPEAKCEWIRSYIQNFLQAK--NAISP-----PVPGTRRTHYSQIWNPPCDGHLKLNTD-ACGPSSSGLGFLLHRSDGTLVAAKSVF
        CD+NS  HG  +S P  +C WI SY QN+ QA+    ISP     P P  R       W PP D  +K+N+D AC  +S+GLG ++    G L+ AKS+F
Subjt:  CDQNSAVHGKQISLPEAKCEWIRSYIQNFLQAK--NAISP-----PVPGTRRTHYSQIWNPPCDGHLKLNTD-ACGPSSSGLGFLLHRSDGTLVAAKSVF

Query:  VPQSLPPLLTEIEGILVGLRFARS
        +P  L PL  EI GIL  L+ A S
Subjt:  VPQSLPPLLTEIEGILVGLRFARS

A0A6J1DX30 uncharacterized protein LOC1110248743.8e-1542.98Show/hide
Query:  DQNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTD-ACGPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPL
        D+NS +HGKQ+S  E KCEW+  ++ +  QA+ +   P   +      Q W P     LKLNTD AC  +S+  G ++  S  +LVAA S+ VP  L PL
Subjt:  DQNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTD-ACGPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPL

Query:  LTEIEGILVGLRFA
        L EI  IL GL+FA
Subjt:  LTEIEGILVGLRFA

A0A803Q0L5 Uncharacterized protein2.1e-0532.74Show/hide
Query:  QNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDA---CGPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPP
        +NS +HG    +     +W R Y+  F   +   +  V   RR +    W  P  G +K+N DA    G   SG+G ++  S G  + A S  V Q L P
Subjt:  QNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDA---CGPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPP

Query:  LLTEIEGILVGLR
        L  E++ ILVGL+
Subjt:  LLTEIEGILVGLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCGATCAAAATTCAGCGGTTCATGGGAAGCAAATTTCTTTACCTGAAGCAAAATGTGAGTGGATTAGATCTTATATTCAGAACTTTTTGCAAGCTAAAAATGCCATTTC
CCCGCCAGTGCCAGGGACTAGAAGAACTCACTATAGCCAGATTTGGAATCCTCCGTGTGACGGCCATTTGAAGCTCAATACCGACGCATGTGGACCTTCTTCTTCTGGTC
TGGGATTTCTCTTGCACAGGTCTGATGGCACTTTGGTAGCGGCCAAATCTGTCTTCGTTCCTCAATCCCTACCACCACTCCTTACTGAAATTGAAGGAATTCTAGTAGGA
CTGCGTTTTGCTCGATCT
mRNA sequenceShow/hide mRNA sequence
TGCGATCAAAATTCAGCGGTTCATGGGAAGCAAATTTCTTTACCTGAAGCAAAATGTGAGTGGATTAGATCTTATATTCAGAACTTTTTGCAAGCTAAAAATGCCATTTC
CCCGCCAGTGCCAGGGACTAGAAGAACTCACTATAGCCAGATTTGGAATCCTCCGTGTGACGGCCATTTGAAGCTCAATACCGACGCATGTGGACCTTCTTCTTCTGGTC
TGGGATTTCTCTTGCACAGGTCTGATGGCACTTTGGTAGCGGCCAAATCTGTCTTCGTTCCTCAATCCCTACCACCACTCCTTACTGAAATTGAAGGAATTCTAGTAGGA
CTGCGTTTTGCTCGATCT
Protein sequenceShow/hide protein sequence
CDQNSAVHGKQISLPEAKCEWIRSYIQNFLQAKNAISPPVPGTRRTHYSQIWNPPCDGHLKLNTDACGPSSSGLGFLLHRSDGTLVAAKSVFVPQSLPPLLTEIEGILVG
LRFARS