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MS004444 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004444
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold804:43659..43922
RNA-Seq ExpressionMS004444
SyntenyMS004444
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1036.96Show/hide
Query:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        F    +K  LS  S +  +F    +   W +  PK CKFF+W L H  +NT D++Q R P+    PN C +C ++ E ++HLF+HCP++  L
Subjt:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.9e-1135.87Show/hide
Query:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        F    +K +LS    +  +F    +   W +  PK CKFF+W L H  +NT D++Q R P+    PN C +C ++ E ++HLF+HCP++  L
Subjt:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1036.96Show/hide
Query:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        F    +K  LS  S +  +F    +   W +  PK CKFF+W L H  +NT D++Q R P+    PN C +C ++ E ++HLF+HCP++  L
Subjt:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

RVW16135.1 putative mitochondrial protein [Vitis vinifera]2.6e-1041.57Show/hide
Query:  FSVQDMKSLLSRPSQTDQSFFFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        FSV+     LS+ S + Q+F     W+  +P   K F+W + H+ +NT D +Q R P  V  P+ C+LC ++GES DHLFLHC  T  L
Subjt:  FSVQDMKSLLSRPSQTDQSFFFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.9e-1135.87Show/hide
Query:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        F    +K +LS    +  +F    +   W +  PK CKFF+W L H  +NT D++Q R P+    PN C +C ++ E ++HLF+HCP++  L
Subjt:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

TrEMBL top hitse value%identityAlignment
A0A438BYP3 Putative mitochondrial protein1.3e-1041.57Show/hide
Query:  FSVQDMKSLLSRPSQTDQSFFFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        FSV+     LS+ S + Q+F     W+  +P   K F+W + H+ +NT D +Q R P  V  P+ C+LC ++GES DHLFLHC  T  L
Subjt:  FSVQDMKSLLSRPSQTDQSFFFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein5.6e-1136.96Show/hide
Query:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        F    +K  LS  S +  +F    +   W +  PK CKFF+W L H  +NT D++Q R P+    PN C +C ++ E ++HLF+HCP++  L
Subjt:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.6e-1136.96Show/hide
Query:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        F    +K  LS  S +  +F    +   W +  PK CKFF+W L H  +NT D++Q R P+    PN C +C ++ E ++HLF+HCP++  L
Subjt:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein4.3e-1135.87Show/hide
Query:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        F    +K +LS    +  +F    +   W +  PK CKFF+W L H  +NT D++Q R P+    PN C +C ++ E ++HLF+HCP++  L
Subjt:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein4.3e-1135.87Show/hide
Query:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL
        F    +K +LS    +  +F    +   W +  PK CKFF+W L H  +NT D++Q R P+    PN C +C ++ E ++HLF+HCP++  L
Subjt:  FSVQDMKSLLSRPSQTDQSF---FFDNFWSLLIPKNCKFFLWCLPHRGLNT-DKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTCAGTACAGGATATGAAATCCCTTCTATCAAGACCGTCACAAACTGATCAATCATTTTTCTTTGACAATTTTTGGAGCCTCCTCATTCCAAAAAATTGCAAATTCTT
TCTTTGGTGCCTTCCCCACAGAGGTCTCAATACAGATAAGATACAAGCTCGGTTTCCATCAATGGTAAGCTTTCCAAATCGGTGTGTTTTATGCTATCAAAATGGCGAAT
CCTTAGATCACTTATTTCTTCATTGTCCATTCACAACTGCTCTT
mRNA sequenceShow/hide mRNA sequence
TTTTCAGTACAGGATATGAAATCCCTTCTATCAAGACCGTCACAAACTGATCAATCATTTTTCTTTGACAATTTTTGGAGCCTCCTCATTCCAAAAAATTGCAAATTCTT
TCTTTGGTGCCTTCCCCACAGAGGTCTCAATACAGATAAGATACAAGCTCGGTTTCCATCAATGGTAAGCTTTCCAAATCGGTGTGTTTTATGCTATCAAAATGGCGAAT
CCTTAGATCACTTATTTCTTCATTGTCCATTCACAACTGCTCTT
Protein sequenceShow/hide protein sequence
FSVQDMKSLLSRPSQTDQSFFFDNFWSLLIPKNCKFFLWCLPHRGLNTDKIQARFPSMVSFPNRCVLCYQNGESLDHLFLHCPFTTAL