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MS004448 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004448
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold804:137387..137597
RNA-Seq ExpressionMS004448
SyntenyMS004448
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0747.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0747.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0747.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPSDG-SLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPSDG-SLSTCVLCYQSGESVDYLFLHRPFTSSLW
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0747.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0747.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPSDG-SLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPSDG-SLSTCVLCYQSGESVDYLFLHRPFTSSLW
TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein7.8e-0847.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein7.8e-0847.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein7.8e-0847.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPS-DGSLSTCVLCYQSGESVDYLFLHRPFTSSLW
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein6.0e-0847.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPSDG-SLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPSDG-SLSTCVLCYQSGESVDYLFLHRPFTSSLW
A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein6.0e-0847.46Show/hide
Query:  KKCKFFIWCLLHRGLNIAEKLQVRLPSDG-SLSTCVLCYQSGESVDYLFLHRPFTSSLW
        KKCKFFIW L+H  +N A++LQ RLP+   S + C +C +S E +++LF+H P++  LW
Subjt:  KKCKFFIWCLLHRGLNIAEKLQVRLPSDG-SLSTCVLCYQSGESVDYLFLHRPFTSSLW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAAATGTAAATTTTTTATCTGGTGTCTCCTTCACCGTGGCCTTAACATAGCAGAAAAGCTTCAGGTCCGCCTTCCCTCCGATGGCTCTCTGTCGACATGTGTCCTTTG
CTATCAAAGTGGAGAATCTGTTGACTATCTTTTTCTTCATCGCCCATTTACATCTTCTCTCTGGTACCATCTTTTCCATACCTTCCAAATACAAACC
mRNA sequenceShow/hide mRNA sequence
AAGAAATGTAAATTTTTTATCTGGTGTCTCCTTCACCGTGGCCTTAACATAGCAGAAAAGCTTCAGGTCCGCCTTCCCTCCGATGGCTCTCTGTCGACATGTGTCCTTTG
CTATCAAAGTGGAGAATCTGTTGACTATCTTTTTCTTCATCGCCCATTTACATCTTCTCTCTGGTACCATCTTTTCCATACCTTCCAAATACAAACC
Protein sequenceShow/hide protein sequence
KKCKFFIWCLLHRGLNIAEKLQVRLPSDGSLSTCVLCYQSGESVDYLFLHRPFTSSLWYHLFHTFQIQT