CuGenDBv2

Gene ID	MS004463
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cytochrome c-type biogenesis ccda-like chloroplastic protein
Genome location	scaffold804:279328..279687
RNA-Seq Expression	MS004463
Synteny	MS004463
Gene Ontology terms	GO:0017004 - cytochrome complex assembly (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6577393.1 Cytochrome c-type biogenesis ccda-like chloroplastic protein 2, partial [Cucurbita argyrosperma subsp. sororia]

8.5e-16

95.74

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

XP_022142907.1 cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Momordica charantia]

6.5e-16

97.87

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

XP_022929535.1 cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita moschata]

8.5e-16

95.74

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

XP_022985240.1 cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita maxima]

8.5e-16

95.74

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

XP_023553444.1 cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita pepo subsp. pepo]

8.5e-16

95.74

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5A0 DsbD domain-containing protein

5.4e-16

93.62

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPI+GGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

A0A5D3BU70 Cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1

7.1e-16

91.49

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DP++GGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

A0A6J1CP79 cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1

3.2e-16

97.87

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

A0A6J1ENE1 cytochrome c-type biogenesis ccda-like chloroplastic protein

4.1e-16

95.74

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

A0A6J1JAT1 cytochrome c-type biogenesis ccda-like chloroplastic protein

4.1e-16

95.74

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

SwissProt top hits

e value

%identity

Alignment

Q2QY07 Cytochrome c-type biogenesis ccda-like chloroplastic protein 2

6.1e-17

85.11

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYV PLL+AASFAGALQSLLSFR++S+WINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

Q2RAR6 Cytochrome c-type biogenesis ccda-like chloroplastic protein 1

6.1e-17

85.11

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DPIVGGSLLLTYTTGYV PLL+AASFAGALQSLLSFR++S+WINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

Q9M5P3 Cytochrome c-type biogenesis ccda-like chloroplastic protein

1.5e-15

78.72

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DP++GGSLLLTYTTGYV PL++AASFAGALQSLLS RK S+WINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

Arabidopsis top hits

e value

%identity

Alignment

AT5G54290.1 cytochrome c biogenesis protein family

1.1e-16

78.72

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DP++GGSLLLTYTTGYV PL++AASFAGALQSLLS RK S+WINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

AT5G54290.2 cytochrome c biogenesis protein family

1.1e-16

78.72

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Query:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV
        +DP++GGSLLLTYTTGYV PL++AASFAGALQSLLS RK S+WINP+
Subjt:  QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPV

Sequences

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CDS sequence

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CAGGATCCGATTGTTGGGGGCAGCCTTCTTTTGACATACACAACTGGCTATGTCGTACCGCTACTTCTCGCTGCCTCATTTGCTGGAGCATTGCAGAGCCTTTTGTCGTT
CCGCAAGTTCTCTTCATGGATTAATCCTGTAAGG

mRNA sequence

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CAGGATCCGATTGTTGGGGGCAGCCTTCTTTTGACATACACAACTGGCTATGTCGTACCGCTACTTCTCGCTGCCTCATTTGCTGGAGCATTGCAGAGCCTTTTGTCGTT
CCGCAAGTTCTCTTCATGGATTAATCCTGTAAGG

Protein sequence

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QDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPVR

MS004463 (gene) of Bitter gourd (TR) v1 genome